PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_004990
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family ERF
Protein Properties Length: 191aa    MW: 20818.4 Da    PI: 6.2475
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_004990genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.39.4e-192373256
          AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                  y+GVr ++ +g+Wv+eIr+p++   + r++lg+f t+e+Aa+a++ a+ +++g+
  DCAR_004990 23 IYRGVRIRS-WGKWVSEIREPRK---KSRIWLGTFATPEMAARAHDVAAIAIKGH 73
                 69****888.**********843...6***********************99986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.6E-132273IPR001471AP2/ERF domain
CDDcd000187.73E-312282No hitNo description
SuperFamilySSF541711.05E-212381IPR016177DNA-binding domain
SMARTSM003804.1E-352386IPR001471AP2/ERF domain
PROSITE profilePS5103222.2732380IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.9E-312381IPR001471AP2/ERF domain
PRINTSPR003675.8E-102435IPR001471AP2/ERF domain
PRINTSPR003675.8E-104662IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MVKKSEKCSS SSSSSIADGK HPIYRGVRIR SWGKWVSEIR EPRKKSRIWL GTFATPEMAA  60
RAHDVAAIAI KGHSAFLNFP DLAHKLPEPA SKSPKDIQAA AAQAAAMDDT TTSHETETEA  120
ELSGAETRPS EAFGESSSTS PTRRGEDPFL GLPHLFQPNL GPKFGYEFPW SLALAETIDG  180
EIWLDEPLLW *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-1721801272Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017234225.11e-138PREDICTED: ethylene-responsive transcription factor TINY-like
SwissprotQ9M0808e-45ERF43_ARATH; Ethylene-responsive transcription factor ERF043
TrEMBLA0A162APW41e-135A0A162APW4_DAUCS; Uncharacterized protein
STRINGXP_010264388.15e-50(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21224225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.13e-33ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]