PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_003669
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family MYB_related
Protein Properties Length: 89aa    MW: 10103.3 Da    PI: 8.8292
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_003669genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.92.3e-08852244
                     SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                     g WT +  + + +a +++ ++   +W  +a+ +  g+t++++k ++
      DCAR_003669  8 GFWTVQQNKAFEEALAKYDKDtpdRWYNVAKAIS-GKTAEEVKRHY 52
                     67********************************.**********9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007174.3E-7658IPR001005SANT/Myb domain
SuperFamilySSF466898.97E-13864IPR009057Homeodomain-like
PROSITE profilePS500906.261056IPR017877Myb-like domain
PfamPF002498.5E-61052IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.9E-51062IPR009057Homeodomain-like
CDDcd001671.66E-61052No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 89 aa     Download sequence    Send to blast
MASMSSHGFW TVQQNKAFEE ALAKYDKDTP DRWYNVAKAI SGKTAEEVKR HYEILVADVK  60
RIENGDVPLP NYRTTRGNYQ GTMSTYIL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A4e-33180181RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017256311.11e-52PREDICTED: protein RADIALIS-like 1
SwissprotF4JVB82e-33RADL1_ARATH; Protein RADIALIS-like 1
TrEMBLA0A162B7K83e-60A0A162B7K8_DAUCS; Uncharacterized protein
STRINGXP_009594360.16e-39(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20224231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39250.17e-36RAD-like 1
Publications ? help Back to Top
  1. Zhang M, et al.
    ROOT HAIR DEFECTIVE3 family of dynamin-like GTPases mediates homotypic endoplasmic reticulum fusion and is essential for Arabidopsis development.
    Plant Physiol., 2013. 163(2): p. 713-20
    [PMID:23922269]