PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_003169
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family bZIP
Protein Properties Length: 312aa    MW: 34181.6 Da    PI: 6.3431
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_003169genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_127.37.8e-0991138451
                  XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
       bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkelee 51 
                   k  +r   NReA r++R++Kka+ + Le++v  L a N++L k+l+ 
  DCAR_003169  91 KKSKKRPVGNREAVRKYREKKKAKAASLEDEVIRLRAINQQLVKRLQG 138
                  355566689**********************************99975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1707.8E-1484156No hitNo description
SMARTSM003383.9E-887155IPR004827Basic-leucine zipper domain
PROSITE profilePS502178.94490137IPR004827Basic-leucine zipper domain
PfamPF077161.5E-1390143IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.81E-693136No hitNo description
CDDcd146862.48E-1194147No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MDDGELDFSN HEMFGGTNLA EIGDLPANCS MDSFFDELLK DTHACTHAHT CNPPGPDASH  60
THTCYHVHTK IVPASSEDKD PSDDTAESAD KKSKKRPVGN REAVRKYREK KKAKAASLED  120
EVIRLRAINQ QLVKRLQGQA VLEAEVARLK CLLVDIRGRI EGEIGAFPYQ KPAKSAIYQN  180
PGASSLPGAY VMNPCSNDQV YCLHPGAESR SEEDAVLNVE AFNGCDFENL QCLGNQSSAI  240
DELPGCGISG SVPAINIPGG NKRKALLVWQ SRLAYYDIFS VLGSYFLRRL WKTIYLLLFD  300
APRIHTALVA C*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the response to zinc ion deficiency. Binds to the consensus sequence 5'-[AG]TGTCGACA[CT]-3' also called zinc deficiency response element (ZDRE). The ZDRE sequence is conserved in the plant kingdom and present in the promoters of genes that constitute the primary response to zinc deficiency, comprising additional ZIP metal transporter genes (PubMed:20479230, PubMed:26306426). Required for zinc accumulation in roots. Mediates the expression of the zinc transporter ZIP12 during growth in zinc-deficient conditions. ZIP12 transporter is involved in zinc uptake in roots (PubMed:26306426). {ECO:0000269|PubMed:20479230, ECO:0000269|PubMed:26306426}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by zinc deficiency. {ECO:0000269|PubMed:20479230}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017231064.10.0PREDICTED: basic leucine zipper 23-like
SwissprotQ8GTS21e-103BZP23_ARATH; Basic leucine zipper 23
TrEMBLA0A162B6620.0A0A162B662_DAUCS; Uncharacterized protein
STRINGXP_002534148.11e-136(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29892452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16770.11e-100bZIP family protein
Publications ? help Back to Top
  1. Azevedo H, et al.
    Transcriptomic profiling of Arabidopsis gene expression in response to varying micronutrient zinc supply.
    Genom Data, 2016. 7: p. 256-8
    [PMID:26981422]
  2. Castro PH, et al.
    Phylogenetic analysis of F-bZIP transcription factors indicates conservation of the zinc deficiency response across land plants.
    Sci Rep, 2017. 7(1): p. 3806
    [PMID:28630437]
  3. Nazri AZ,Griffin JHC,Peaston KA,Alexander-Webber DGA,Williams LE
    F-group bZIPs in barley-a role in Zn deficiency.
    Plant Cell Environ., 2017. 40(11): p. 2754-2770
    [PMID:28763829]
  4. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]