PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_002662
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family ERF
Protein Properties Length: 189aa    MW: 20743.5 Da    PI: 9.1908
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_002662genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.32.2e-1981129155
          AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  + y+GVr++k +g+WvAeIr+p       r++lg+f t  eAa a++ a++k++g
  DCAR_002662  81 CNYRGVRQRK-WGKWVAEIRHP-----GSRVWLGTFNTSVEAALAYDDAALKMYG 129
                  56*******9.**********9.....7*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008476.1E-1481129IPR001471AP2/ERF domain
CDDcd000182.39E-2081139No hitNo description
PROSITE profilePS5103221.4782137IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.6E-2982137IPR001471AP2/ERF domain
SMARTSM003804.6E-3782143IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-2182138IPR016177DNA-binding domain
PRINTSPR003672.8E-108394IPR001471AP2/ERF domain
PRINTSPR003672.8E-10103119IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MEQLKVKAVH GVKTRIITLP PCIAIWLTLR FHTHQDYSSA LNKMDKAETD SSTRSNKKQK  60
TSSYSRRGCM KGKGGEENGL CNYRGVRQRK WGKWVAEIRH PGSRVWLGTF NTSVEAALAY  120
DDAALKMYGP SATLNLPVTT SSTNTTGAAA GPDIIEPSCG NDLSGEISVL LEDFQDLAPP  180
TLLNWWKD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-1982142568ATERF1
3gcc_A1e-1982142568ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017251579.11e-140PREDICTED: dehydration-responsive element-binding protein 2D-like
TrEMBLA0A162AJP71e-138A0A162AJP7_DAUCS; Uncharacterized protein
STRINGXP_004293490.14e-37(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31552247
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75490.12e-33ERF family protein