PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_002594
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family TCP
Protein Properties Length: 248aa    MW: 26652.8 Da    PI: 9.8693
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_002594genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP126.62.6e-3927126299
          TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg...kaaksaa. 95 
                  a+kk + +++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++a+++ ++s s  +sn+s +   + +k+a+ 
  DCAR_002594  27 AVKKPPAKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPANFS-TVSVSLRNSNNSLSaplE-QKQAPq 122
                  789******************************************************************888.444444444333332221.222211 PP

          TCP  96 kskk 99 
                   +++
  DCAR_002594 123 LNQH 126
                  2222 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136927.8923387IPR017887Transcription factor TCP subgroup
PfamPF036343.8E-3633127IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MSSPPPPPLP DSQKQLATAT PTNGTVAVKK PPAKDRHSKV DGRGRRIRMP IICAARVFQL  60
TRELGHKSDG QTIEWLLRQA EPSIIAATGT GTTPANFSTV SVSLRNSNNS LSAPLEQKQA  120
PQLNQHLFTP TPFILGKRAR EEDSIRAGEE KSDEVSEHSV GPAGGFWALP GRPDYGQVWS  180
FAAGSDMVVP TPVNMSQQNR YMQVQGEASA ARVGNYLPIT QGHLNLLASL SGSHQQSGGG  240
RREEDHH*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ1487530.0FJ148753.1 Daucus carota subsp. sativus clone BAC C155J02 genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017238778.10.0PREDICTED: transcription factor TCP7
SwissprotQ9FMX22e-81TCP7_ARATH; Transcription factor TCP7
TrEMBLA0A166H8G50.0A0A166H8G5_DAUCS; Uncharacterized protein
STRINGSolyc04g009180.1.11e-95(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA39512242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23280.14e-61TCP family protein