PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_002494
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family AP2
Protein Properties Length: 476aa    MW: 53021.7 Da    PI: 6.7918
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_002494genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.18.2e-17130179155
          AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                  s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  DCAR_002494 130 SQYRGVTFYRRTGRWESHIWD------TgKQVYLGGFDTAHAAARAYDRAAIKFRG 179
                  78*******************......44*************************98 PP

2AP2414.9e-13222272155
          AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  s+y+GV+ +k  grW+A+   +     +k+++lg f+++ eAa+a+++a+ k +g
  DCAR_002494 222 SRYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDSEIEAARAYDKAAIKCNG 272
                  79********.7******5553..2.26**********99**********99776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008477.2E-10130179IPR001471AP2/ERF domain
CDDcd000181.15E-12130189No hitNo description
SuperFamilySSF541712.35E-16130188IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.105.2E-18131187IPR001471AP2/ERF domain
PROSITE profilePS5103218.07131187IPR001471AP2/ERF domain
SMARTSM003801.6E-30131193IPR001471AP2/ERF domain
PfamPF008478.3E-9222272IPR001471AP2/ERF domain
CDDcd000184.48E-25222282No hitNo description
SuperFamilySSF541711.31E-16222281IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.9E-15223280IPR001471AP2/ERF domain
PROSITE profilePS5103215.738223280IPR001471AP2/ERF domain
SMARTSM003801.3E-31223286IPR001471AP2/ERF domain
PRINTSPR003676.5E-6224235IPR001471AP2/ERF domain
PRINTSPR003676.5E-6262282IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 476 aa     Download sequence    Send to blast
MLDLNLNYFP SSSFHDPAES QHLHLFGMQM NEHSGTSNSS VVNVETSSNA GDEEYSNQPY  60
HEHCFDILKS GDDQVDEHEE SYNQGSVVKP RFTTKELFPV RGSPRRMDPL VQQQVQQVKR  120
SRRGPRSKSS QYRGVTFYRR TGRWESHIWD TGKQVYLGGF DTAHAAARAY DRAAIKFRGA  180
NADINFSISD YGEDLQKMKN VTKEEFVQIL RRQSTGFSRG SSRYRGVTLH KCGRWEARMG  240
QFLGKKYIYL GLFDSEIEAA RAYDKAAIKC NGRDAVTNFE PSTYDNDFCS EAETGVTCST  300
LCFTTGSGQS LDLNLEMSPT DFADGAKGTD DFGSLSFQNH LKDIPDVRES RHKVIQIEES  360
SPSAIMGTPL PLGQVYTPGL PSFRSGVNSS LLPVYEGRAM DKIIEVDLQP HWAWSNQGSY  420
AEPTSVPLFS TAASSGFVTS RATAASAGFY FISPPHRHTS KPCQIAANTN SVFYY*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition. Regulator of starch biosynthesis especially during seed development (e.g. endosperm starch granules); represses the expression of type I starch synthesis genes. Prevents lemma and palea elongation as well as grain growth (By similarity). {ECO:0000250|UniProtKB:P47927, ECO:0000250|UniProtKB:Q2TQ34}.
UniProtProbable transcription factor (By similarity). Involved in spikelet transition. Together with SNB, controls synergistically inflorescence architecture and floral meristem establishment via the regulation of spatio-temporal expression of B- and E-function floral organ identity genes in the lodicules and of spikelet meristem genes. Prevents lemma and palea elongation as well as grain growth (By similarity). {ECO:0000250|UniProtKB:P47927, ECO:0000250|UniProtKB:Q84TB5}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017221360.10.0PREDICTED: floral homeotic protein APETALA 2-like
SwissprotB8AMA98e-93AP22_ORYSI; APETALA2-like protein 2
SwissprotB8AXC34e-92AP21_ORYSI; APETALA2-like protein 1
TrEMBLA0A169WSM80.0A0A169WSM8_DAUCS; Uncharacterized protein
STRINGXP_009606014.11e-139(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59124116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.32e-88related to AP2.7