PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_001392
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family ERF
Protein Properties Length: 283aa    MW: 31091.9 Da    PI: 6.4058
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_001392genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.91.7e-20111160255
          AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                  +y+GVr+++ +g+W+AeIrdp+    + +r++lg+f taeeAa+a++ a+++++g
  DCAR_001392 111 KYRGVRRRP-WGKWAAEIRDPY----KaARVWLGTFTTAEEAARAYDVAALRFRG 160
                  8********.**********76....35************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.5E-32110169IPR001471AP2/ERF domain
SMARTSM003809.9E-37111174IPR001471AP2/ERF domain
PROSITE profilePS5103226.055111168IPR001471AP2/ERF domain
SuperFamilySSF541712.81E-23111169IPR016177DNA-binding domain
PfamPF008472.7E-13111160IPR001471AP2/ERF domain
PRINTSPR003678.2E-12112123IPR001471AP2/ERF domain
CDDcd000183.46E-28119170No hitNo description
PRINTSPR003678.2E-12134150IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MDRSGTRQGD REHLEPVLMG TRFGGQREDE MSVMVSALTH VVAGGGSDGG FGQKRHRDEG  60
GDHRDPVPAG FLPYQDPSQE GSPTYVHDSS SNDTNNSQEP SSGEEIQARR KYRGVRRRPW  120
GKWAAEIRDP YKAARVWLGT FTTAEEAARA YDVAALRFRG SKAKLNFPEN VTRRPSSSSQ  180
APQWIISSSP DTSFTVSTMP EPVVQNAQNV YPVQGAGEYM DYYSQQSTSL LDQFAFSSAG  240
TSAPTLHSSS SSSTSDYTST IGMPNYYPPN FPDFDPGHNR RF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-22110172467ATERF1
3gcc_A4e-22110172467ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017221001.10.0PREDICTED: ethylene-responsive transcription factor ERF110-like
TrEMBLA0A162AF540.0A0A162AF54_DAUCS; Uncharacterized protein
STRINGXP_004160502.13e-43(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61890.11e-30ERF family protein