PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g047467m
Common NameCISIN_1g047467mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family M-type_MADS
Protein Properties Length: 147aa    MW: 17269.7 Da    PI: 10.1794
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g047467mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF54.12e-171560449
                       -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
             SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                       e +  r +tfskRr gi KKA EL +L++ e+av++fs++gk y++
  orange1.1g047467m 15 EKEDERLITFSKRRSGIYKKACELVTLTGSEIAVVVFSQSGKPYTF 60
                       5667899**************************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004328.3E-21463IPR002100Transcription factor, MADS-box
PROSITE profilePS5006621.264464IPR002100Transcription factor, MADS-box
PRINTSPR004043.3E-15626IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.06E-22679IPR002100Transcription factor, MADS-box
PfamPF003194.7E-201560IPR002100Transcription factor, MADS-box
PRINTSPR004043.3E-152641IPR002100Transcription factor, MADS-box
PRINTSPR004043.3E-154162IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 147 aa     Download sequence    Send to blast
KKTKWRKKIE TKKNEKEDER LITFSKRRSG IYKKACELVT LTGSEIAVVV FSQSGKPYTF  60
GHPSVEAVAN RFLGMNHLPN DNIHSLVVGH RQVRINELNQ QHNELRRQLE EEKEQEKILT  120
QMRRGKETQP RWWETPVDEH NLQELL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006421334.11e-100agamous-like MADS-box protein AGL62
TrEMBLA0A067DZ331e-103A0A067DZ33_CITSI; Uncharacterized protein (Fragment)
STRINGXP_006421334.11e-100(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM8628390
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.12e-24AGAMOUS-like 61