PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g045481m
Common NameCISIN_1g045481mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family M-type_MADS
Protein Properties Length: 178aa    MW: 20034 Da    PI: 8.8843
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g045481mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF67.61.2e-21450349
                       --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
             SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                       i  k n qvtfskRr+g++KKA+ELS+LC++++a+i+fs+ +k + +
  orange1.1g045481m  4 IPKKNNLQVTFSKRRAGVFKKASELSTLCGVDIALIVFSPANKAFSF 50
                       7789999**********************************997766 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006620.927154IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.09E-23177IPR002100Transcription factor, MADS-box
SMARTSM004321.6E-23153IPR002100Transcription factor, MADS-box
PfamPF003191.2E-23350IPR002100Transcription factor, MADS-box
PRINTSPR004044.9E-101631IPR002100Transcription factor, MADS-box
PRINTSPR004044.9E-103152IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    Send to blast
ISKIPKKNNL QVTFSKRRAG VFKKASELST LCGVDIALIV FSPANKAFSF GHPNVDSILD  60
LYLARNPNPP SESSTDRLIE AHRNANIREL NMQLTQVLHQ LEVEKKHGEV LSEIRKASCR  120
QCWWEAPINE LGLHELEQLK TAMEELKKNV EQQANKILID SKNNPSPFFG LGFWTLS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3kov_A4e-15181786Myocyte-specific enhancer factor 2A
3kov_B4e-15181786Myocyte-specific enhancer factor 2A
3kov_I4e-15181786Myocyte-specific enhancer factor 2A
3kov_J4e-15181786Myocyte-specific enhancer factor 2A
3p57_A4e-15181786Myocyte-specific enhancer factor 2A
3p57_B4e-15181786Myocyte-specific enhancer factor 2A
3p57_C4e-15181786Myocyte-specific enhancer factor 2A
3p57_D4e-15181786Myocyte-specific enhancer factor 2A
3p57_I4e-15181786Myocyte-specific enhancer factor 2A
3p57_J4e-15181786Myocyte-specific enhancer factor 2A
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed during the syncytial endosperm development. {ECO:0000269|PubMed:18334668}.
UniprotTISSUE SPECIFICITY: Expressed in the endosperm but not in the embryo. Detected in young siliques, roots, leaves, stems, young flowers and anthers. {ECO:0000269|PubMed:18334668}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Required for suppression of cellularization and promotion of nuclear proliferation during early endosperm development. The FERTILIZATION-INDEPENDENT SEED (FIS) polycomb complex is required for suppression of ALG62 expression at the end of the syncytial phase of endosperm development. {ECO:0000269|PubMed:18334668}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006480851.11e-122agamous-like MADS-box protein AGL62
SwissprotQ9FKK28e-49AGL62_ARATH; Agamous-like MADS-box protein AGL62
TrEMBLA0A067D6371e-127A0A067D637_CITSI; Uncharacterized protein (Fragment)
STRINGXP_006480851.11e-121(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM8628390
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.13e-51AGAMOUS-like 62
Publications ? help Back to Top
  1. Xu W, et al.
    Endosperm and Nucellus Develop Antagonistically in Arabidopsis Seeds.
    Plant Cell, 2016. 28(6): p. 1343-60
    [PMID:27233529]
  2. Figueiredo DD,Batista RA,Roszak PJ,Köhler C
    Auxin production couples endosperm development to fertilization.
    Nat Plants, 2015. 1: p. 15184
    [PMID:27251719]
  3. Figueiredo DD,Batista RA,Roszak PJ,Hennig L,Köhler C
    Auxin production in the endosperm drives seed coat development in Arabidopsis.
    Elife, 2017.
    [PMID:27848912]
  4. Fiume E,Coen O,Xu W,Lepiniec L,Magnani E
    Growth of the Arabidopsis sub-epidermal integument cell layers might require an endosperm signal.
    Plant Signal Behav, 2017. 12(8): p. e1339000
    [PMID:28613109]
  5. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]