PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g045032m
Common NameCISIN_1g045032mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family WRKY
Protein Properties Length: 355aa    MW: 39139.1 Da    PI: 5.0588
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g045032mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY83.12.6e-26113169659
                        -EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   6 nWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                        +WrKYGqK++ g+++pr+YYrCt++   gC ++k+v+rs+edp+++eitY+g+H++ 
  orange1.1g045032m 113 SWRKYGQKDILGAKYPRGYYRCTYRngqGCLATKQVQRSDEDPTIFEITYRGNHTCA 169
                        7***********************99999**************************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.2E-25111170IPR003657WRKY domain
SuperFamilySSF1182908.76E-23113170IPR003657WRKY domain
SMARTSM007744.2E-34113170IPR003657WRKY domain
PfamPF031062.4E-24113168IPR003657WRKY domain
PROSITE profilePS5081120.759114166IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MDRNMGEWEK NSLINVLLQG RESAKQLQIQ LNLRTSSSSH DQTRGIMLVQ KIISSYEKAL  60
SMLNFCGSSS STQEPQPPAG PVTESPTSLT GSPLSEDSDR DVKDPQEDVS KKSWRKYGQK  120
DILGAKYPRG YYRCTYRNGQ GCLATKQVQR SDEDPTIFEI TYRGNHTCAQ ASNAILPPPT  180
QPETKEPDTA AIEPQQHNYY QTTPQQQPED ALLNLRKGLK IVTEDLDVKP QQQSSIPPFH  240
FPSPSVVIHP NFTGNFSPSF VSPQASEANN YTFSTSPPSG MNNFQGNQNF QSSSQDSEVN  300
EIISGAAAAA ATSATNPPTV DLDFPFGNIE FDPNFTFDNL GFFSSFHHSE KNSK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B3e-181131662174Disease resistance protein RRS1
5w3x_D3e-181131662174Disease resistance protein RRS1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006490570.10.0probable WRKY transcription factor 41 isoform X1
RefseqXP_024040004.10.0probable WRKY transcription factor 41 isoform X1
SwissprotQ8H0Y83e-45WRK41_ARATH; Probable WRKY transcription factor 41
TrEMBLA0A067EQJ50.0A0A067EQJ5_CITSI; Uncharacterized protein
STRINGXP_006490570.10.0(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19332783
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.13e-47WRKY family protein
Publications ? help Back to Top
  1. Duan S, et al.
    Functional characterization of a heterologously expressed Brassica napus WRKY41-1 transcription factor in regulating anthocyanin biosynthesis in Arabidopsis thaliana.
    Plant Sci., 2018. 268: p. 47-53
    [PMID:29362083]