PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g042235m
Common NameCISIN_1g042235mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family M-type_MADS
Protein Properties Length: 225aa    MW: 24922.1 Da    PI: 8.6046
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g042235mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF337.5e-111362249
                       ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T..TSEEEEE CS
             SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss..tgklyey 49
                       r + k +r v+fskRr+g+l KA E +  +  + a+++ s+  + ++y++
  orange1.1g042235m 13 RRDTKEQRAVSFSKRRHGLLNKAAEYCLRTRSQLALLVSSPvsDTTFYTF 62
                       5567899********************************96336778887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006614.815464IPR002100Transcription factor, MADS-box
SMARTSM004324.0E-9465IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.7E-14585IPR002100Transcription factor, MADS-box
PRINTSPR004043.3E-5626IPR002100Transcription factor, MADS-box
PfamPF003191.2E-91762IPR002100Transcription factor, MADS-box
PRINTSPR004043.3E-52641IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MVAVGKRRIP LKRRDTKEQR AVSFSKRRHG LLNKAAEYCL RTRSQLALLV SSPVSDTTFY  60
TFGHSSVDAV LDAFVNNRAP EAADKELVRL GISMFNEVKD LELYDKKISK AIKSDGNLER  120
EGFWEDYEKL GNSDESIGEL GVIVDKLAKA KEKAILRLTD LLASPQVSNS GSCSASASAS  180
ASNVGCASDE QFKFGNNYAC GERFKFGNNH IHEDDNKKEF IKFGT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A067EMG91e-164A0A067EMG9_CITSI; Uncharacterized protein (Fragment)
STRINGXP_006477889.11e-163(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17339310
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46408.14e-18AGAMOUS-like 97