PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g040756m
Common NameCISIN_1g040756mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family Trihelix
Protein Properties Length: 292aa    MW: 32485.1 Da    PI: 9.5178
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g040756mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix58.61.6e-1822109279
           trihelix   2 WtkqevlaLiearremeerlrrgk..........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstc 79 
                        Wt +e+++Liea++ ++er  +++           ++ +W++v +++ ++g+ rs++qC++kw+nl ++yk++++ e+k  s sss+ 
  orange1.1g040756m  22 WTVSETMVLIEAKQMDDERRMKRSsgessesrgkPAELRWKWVEDYCCRKGCLRSQNQCNDKWDNLMRDYKRVRDYERKLLSSSSSSS 109
                        *************96555555321233444444499*******************************************976666554 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.981488IPR017877Myb-like domain
PfamPF138373.2E-1321102No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MTDQGGDGGG GTGMREYRKG NWTVSETMVL IEAKQMDDER RMKRSSGESS ESRGKPAELR  60
WKWVEDYCCR KGCLRSQNQC NDKWDNLMRD YKRVRDYERK LLSSSSSSSP SDHGNIKAQN  120
VSYWKMEKNE RKEKNLPTNM LPQIYEALVE VVEKKGAGQR VIAGAGVGVS VASGSHPHVG  180
YMVQPIAAAA SLPPMLQQQH HQPSAPTTML QPQPLPLPPL SLQPPPPQPQ AAVPTILIRV  240
SIQTHRQRGE KEEEQKEVVG ISREPVLAPP PLQVQALLKN LEQLFPKVLP L*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.23510.0callus| flower
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024951062.11e-177trihelix transcription factor ASR3 isoform X1
TrEMBLA0A067GFI40.0A0A067GFI4_CITSI; Uncharacterized protein
STRINGXP_006468473.11e-175(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM34932662
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35640.12e-53Trihelix family protein