PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g040653m
Common NameCISIN_1g040653mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family MYB_related
Protein Properties Length: 229aa    MW: 26125.5 Da    PI: 8.4601
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g040653mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.43.9e-091955139
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHH CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkq 39
                       rg+ + +Edel++++ ++l ++ W++Ia +++ gRt+++
  orange1.1g040653m 19 RGNISHDEDELIIRLLNLLANR-WSLIAGRLP-GRTDNE 55
                       78999*****************.*********.****96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.1E-10125IPR009057Homeodomain-like
SuperFamilySSF466893.88E-13255IPR009057Homeodomain-like
PROSITE profilePS5129413.2251462IPR017930Myb domain
SMARTSM007170.00151860IPR001005SANT/Myb domain
PfamPF002493.1E-71955IPR001005SANT/Myb domain
CDDcd001671.77E-52355No hitNo description
Gene3DG3DSA:1.10.10.602.6E-112655IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
CGKSCRLRWL NYLRPDIKRG NISHDEDELI IRLLNLLANR WSLIAGRLPG RTDNENMKSR  60
IIGAPTLENK KLQDHHQSPS SSTACTRKTL NQCQEKPKLG SKKFIAKTDS YPIRTRASKR  120
TKALFFSTPE QEKSYGQDQL PNLDDTDSIG GDIVSAINTC DKDKGYYSSQ NSDGKVKDSE  180
FASVDELIRS EFEWFRALFL YTYIWVLHMN YINNDGSICV YCEDRLAI*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024036075.11e-93transcription factor TT2
TrEMBLA0A067FNL61e-169A0A067FNL6_CITSI; Uncharacterized protein (Fragment)
STRINGXP_006426646.14e-94(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM3329322
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G35550.15e-19MYB family protein