PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g039131m
Common NameCISIN_1g039131mg, LOC102628040
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family Trihelix
Protein Properties Length: 386aa    MW: 45331.6 Da    PI: 6.9282
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g039131mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix68.61.2e-21103199186
           trihelix   1 rWtkqevlaLiearr........emeerlrrgk........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tses 75 
                        +Wt+++v++Li  ++        +++      +        +k ++W+ vsk+m erg+++sp+qC++k++nlnk ykk+++  +++ ++++
  orange1.1g039131m 103 KWTEEMVKLLIYTVSyirqfalsNVG------NgrnepsflQKIGKWKVVSKVMVERGYRVSPQQCEDKFNNLNKTYKKLNDVLGRGmSCKV 188
                        7*************944444333333......133455677**********************************************88999 PP

           trihelix  76 sstcpyfdqle 86 
                        +++ + +d+++
  orange1.1g039131m 189 VENPKILDEID 199
                        99999999886 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.8E-18103224No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MEGQSSLTGG MIMEGLNSFQ DLQGAMQLHH QQDPNFYQPS CVVQVQPESV FPLRWQYMEE  60
QPLSYIDYNE DQRGKNLLMD CAIPGVDEHY AVEGIRTPWR RIKWTEEMVK LLIYTVSYIR  120
QFALSNVGNG RNEPSFLQKI GKWKVVSKVM VERGYRVSPQ QCEDKFNNLN KTYKKLNDVL  180
GRGMSCKVVE NPKILDEIDI PERKKDNAKK ILSSKQLFFE QMCSYHSGNQ LCLPHDPDLQ  240
RSLQLALSKK LDYDKQEQDP GAYTQDNETE DSNLKSMDYN GILEDHSQHA LTNLEGVHPE  300
GNTADGLWEQ WVAFRSCRLK LQRLQVNARI LRLENRWFKW QRICWRKDRE LIRMRLENER  360
LKIENERIAL ELKYKEMRAD YDLTV*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006495058.10.0uncharacterized protein LOC102628040
TrEMBLA0A067DWB00.0A0A067DWB0_CITSI; Uncharacterized protein
STRINGXP_006495058.10.0(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM50422752
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76870.19e-79