PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g038007m
Common NameCISIN_1g038007mg, LOC102626226
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family LBD
Protein Properties Length: 231aa    MW: 24549.8 Da    PI: 7.927
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g038007mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26094.31.4e-294106198
             DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqql 87 
                        +C++C+vlr++C ++C ++p++     p+ q++++ +++k++G++ +++l++a p++ r+++++sl+yeA+ r+ +P+yG+vg++++++++l
  orange1.1g038007m   4 SCNGCRVLRKGCGENCSIRPCLqwiksPQCQANATLFLAKFYGRAGLVNLINAGPQDLRPAIFKSLLYEACGRIVNPIYGSVGLMWSGRWHL 95 
                        6*************************99**************************************************************** PP

             DUF260  88 eqlkaelallk 98 
                        +q+++e++ ++
  orange1.1g038007m  96 CQAAVEAVFRG 106
                        *****998766 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089116.4543109IPR004883Lateral organ boundaries, LOB
PfamPF031957.0E-244102IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MRVSCNGCRV LRKGCGENCS IRPCLQWIKS PQCQANATLF LAKFYGRAGL VNLINAGPQD  60
LRPAIFKSLL YEACGRIVNP IYGSVGLMWS GRWHLCQAAV EAVFRGEPVT PLSSESALQA  120
GDIRHVSKDE SSAAAAAVSD KLHKVKSRRF KRSAPKPRSK PERAADAKVV EPLLDNSGGE  180
STSCDPELTQ RDSGEGDSVS VETVEATLAK TDGGADGSDV DLELSLGFGI *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.53760.0fruit| leaf| seed| vegetative meristem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006485788.11e-169PREDICTED: LOB domain-containing protein 41
SwissprotQ9M8862e-78LBD41_ARATH; LOB domain-containing protein 41
TrEMBLA0A067F1R71e-169A0A067F1R7_CITSI; Uncharacterized protein
STRINGVIT_17s0000g03720.t012e-95(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1802789
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.15e-76LOB domain-containing protein 41