PlantTFDB
Plant Transcription Factor Database
v5.0
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g036565m
Common NameCISIN_1g036565mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family LBD
Protein Properties Length: 181aa    MW: 20043.1 Da    PI: 8.3117
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g036565mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260129.31.6e-40201191100
             DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 
                        +CaaCk+l+rkC + C++apyf +++pkkfa vhk+FGasnv+k+l+++pee+red+++sl+yeAear+rdPvyG++g i  lq+++ +l++
  orange1.1g036565m  20 SCAACKLLKRKCIPTCIFAPYFRSDEPKKFAKVHKVFGASNVSKILTEVPEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQRKMIELQQ 111
                        6******************************************************************************************* PP

             DUF260  93 elallkee 100
                        +la+++++
  orange1.1g036565m 112 DLAVARAR 119
                        ***99875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089125.61419120IPR004883Lateral organ boundaries, LOB
PfamPF031955.5E-4020117IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    Send to blast
MKKWMCYKAM RGHEPRSSSS CAACKLLKRK CIPTCIFAPY FRSDEPKKFA KVHKVFGASN  60
VSKILTEVPE EQREDTVNSL AYEAEARLRD PVYGCIGAIA LLQRKMIELQ QDLAVARARL  120
ARYTTPAASS CAVLNDLCVG GSPAFSDLAA CGDFFDSFSQ NSLELNRVGD MYDFSQVPYM  180
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-48151236114LOB family transfactor Ramosa2.1
5ly0_B1e-48151236114LOB family transfactor Ramosa2.1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.4900.0fruit
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006435777.11e-133LOB domain-containing protein 21
RefseqXP_006486289.11e-133LOB domain-containing protein 21
SwissprotQ9SRL87e-67LBD21_ARATH; LOB domain-containing protein 21
TrEMBLA0A067FNC51e-131A0A067FNC5_CITSI; Uncharacterized protein
TrEMBLA0A2H5NJW61e-131A0A2H5NJW6_CITUN; Uncharacterized protein
TrEMBLV4T7091e-131V4T709_9ROSI; Uncharacterized protein
STRINGXP_006486289.11e-132(Citrus sinensis)
STRINGXP_006435777.11e-132(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM102552735
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11090.13e-69LOB domain-containing protein 21
Publications ? help Back to Top
  1. Weber AP,Weber KL,Carr K,Wilkerson C,Ohlrogge JB
    Sampling the Arabidopsis transcriptome with massively parallel pyrosequencing.
    Plant Physiol., 2007. 144(1): p. 32-42
    [PMID:17351049]