PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g032204m
Common NameCISIN_1g028980mg, LOC102611194
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family YABBY
Protein Properties Length: 146aa    MW: 16489.4 Da    PI: 10.4093
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g032204mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY126.83.1e-394311894170
              YABBY  94 tsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                          ++++k  ++e+    r  p    PekrqrvPsayn+fikeeiqrika+nPdishreafs+aaknWahfP+ihfgl
  orange1.1g032204m  43 MRTPTNK-ATEERVVNRRESPHSTTPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGL 118
                        2222222.33333334455668999**************************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046908.2E-3919118IPR006780YABBY protein
SuperFamilySSF470953.27E-858111IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.107.2E-565112IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:1902183Biological Processregulation of shoot apical meristem development
GO:2000024Biological Processregulation of leaf development
Sequence ? help Back to Top
Protein Sequence    Length: 146 aa     Download sequence    Send to blast
MAAAFQSLSW QDVHHHQAPS YASPECRIDL GSSSKCNNKI SAMRTPTNKA TEERVVNRRE  60
SPHSTTPEKR QRVPSAYNQF IKEEIQRIKA NNPDISHREA FSTAAKNWAH FPHIHFGLML  120
EANNQPKLDD ASGNRLMSRT ALRNK*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.117341e-95callus| flower| leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ6677462e-54KJ667746.1 Solanum virginianum YAB5 protein mRNA, complete cds.
GenBankKJ6677442e-54KJ667744.1 Solanum sisymbriifolium YAB5 protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description<`s\vl VE`s\vl V ="width: 15%">RefseqXP_006450895.11e-105hypothetical protein CICLE_v10009560mg
RefseqXP_006450897.11e-106hypothetical protein CICLE_v10009560mg
RefseqXP_006475868.11e-105PREDICTED: axial regulator YABBY 5 isoform X1
SwissprotQ8GW462e-48YAB5_ARATH; Axial regulator YABBY 5
TrEMBLA0A067GNH41e-105A0A067GNH4_CITSI; Uncharacterized protein
TrEMBLA0A067GY421e-106A0A067GY42_CITSI; Uncharacterized protein
TrEMBLV4UDN91e-106V4UDN9_9R
TrEMBLV4UIV51e-105V4UIV5_9R
STRINGVIT_11s0016g05590.t012e-72(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26580.21e-49YABBY family protein