PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g031444m
Common NameCISIN_1g031444mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family MYB_related
Protein Properties Length: 160aa    MW: 18034.8 Da    PI: 5.889
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g031444mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.71.8e-10657345
                       SS-HHHHHHHHHHHHHTTTT..........-HHHHHHHHTTTS-HHHHHHHHH CS
    Myb_DNA-binding  3 rWTteEdellvdavkqlGgg..........tWktIartmgkgRtlkqcksrwq 45
                        W+ eEd+ + +a++++  +          +W +Ia++++  R+ +++k ++q
  orange1.1g031444m  6 TWSREEDKAFENAIAMHCIEeddskeeqqqQWQKIASMVP-SRSVEELKQHYQ 57
                       5****************999********************.***********9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.236160IPR017877Myb-like domain
SMARTSM007172.4E-7362IPR001005SANT/Myb domain
PfamPF002497.9E-8657IPR001005SANT/Myb domain
CDDcd001678.67E-6660No hitNo description
Gene3DG3DSA:1.10.10.609.2E-7660IPR009057Homeodomain-like
SuperFamilySSF466892.01E-9767IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 160 aa     Download sequence    Send to blast
MSSAATWSRE EDKAFENAIA MHCIEEDDSK EEQQQQWQKI ASMVPSRSVE ELKQHYQILL  60
EDVNAIEAGN IPLPNYVGED RATSSTKDFH GPSTAADNRS NGVYGSGFSG LSHDPSGHGS  120
KGSSKSEQER RKGIPWTEEE HRQIWKRRLE KHFKKFCDI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-14376773RADIALIS
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.47591e-167fruit
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006485754.11e-100transcription factor MYBS1
TrEMBLA0A067FM461e-115A0A067FM46_CITSI; Uncharacterized protein
STRINGXP_006485754.11e-99(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35562861
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49010.11e-30MYB family protein