PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g030342m
Common NameCISIN_1g028980mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family YABBY
Protein Properties Length: 180aa    MW: 20253.2 Da    PI: 10.4122
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g030342mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY130.22.7e-407515292170
              YABBY  92 astsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                        +   ++++k  ++e+    r  p    PekrqrvPsayn+fikeeiqrika+nPdishreafs+aaknWahfP+ihfgl
  orange1.1g030342m  75 SAMRTPTNK-ATEERVVNRRESPHSTTPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGL 152
                        222222222.33333334455668899**************************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046906.5E-4019152IPR006780YABBY protein
SuperFamilySSF470955.24E-892145IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.101.1E-499146IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:1902183Biological Processregulation of shoot apical meristem development
GO:2000024Biological Processregulation of leaf development
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MRALLQSMVR EYGSRFSVTV MARCSSSSGF LLQLLLLLLG ITLFEEIEAF KAPSYASPEC  60
RIDLGSSSKC NNKISAMRTP TNKATEERVV NRRESPHSTT PEKRQRVPSA YNQFIKEEIQ  120
RIKANNPDIS HREAFSTAAK NWAHFPHIHF GLMLEANNQP KLDDASGNRL MSRTALRNK*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.117343e-66callus| flower| leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ6677463e-54KJ667746.1 Solanum virginianum YAB5 protein mRNA, complete cds.
GenBankKJ6677443e-54KJ667744.1 Solanum sisymbriifolium YAB5 protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006450895.11e-93hypothetical protein CICLE_v10009560mg
RefseqXP_006450897.18e-94hypothetical protein CICLE_v10009560mg
RefseqXP_006475868.11e-93PREDICTED: axial regulator YABBY 5 isoform X1
SwissprotQ8GW462e-46YAB5_ARATH; Axial regulator YABBY 5
TrEMBLA0A067GKS61e-132A0A067GKS6_CITSI; Uncharacterized protein
STRINGVIT_11s0016g05590.t019e-64(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26580.23e-47YABBY family protein