PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g029967m
Common NameCISIN_1g029862mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family YABBY
Protein Properties Length: 185aa    MW: 20549.4 Da    PI: 8.5774
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g029967mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY222.11.6e-6821572170
              YABBY   2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesas 93 
                        +++ +se+vCyv+Cn+CntilavsvP +slf++vtvrCGhC++ll vn+  a q+++ ++         ++++ + e++ +k   +++++++
  orange1.1g029967m   2 SLDLASERVCYVHCNYCNTILAVSVPCSSLFNIVTVRCGHCANLLNVNMVSALQAVPLQDP--------QKQHINLEDSITKDCGSSSKCNK 85 
                        567799******************************************9999999998885........44555555555555555555544 PP

              YABBY  94 tsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                         s +     e  ++e+pr+pp irPPekrqrvPsaynrfikeeiqrikasnPdishreafs+aaknWahfP+ihfgl
  orange1.1g029967m  86 FSSAF----ETAEHETPRMPP-IRPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGL 157
                        44444....5678999**999.9****************************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046901.9E-736157IPR006780YABBY protein
SuperFamilySSF470951.7E-8101151IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.103.6E-5105151IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
GO:0010158Biological Processabaxial cell fate specification
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MSLDLASERV CYVHCNYCNT ILAVSVPCSS LFNIVTVRCG HCANLLNVNM VSALQAVPLQ  60
DPQKQHINLE DSITKDCGSS SKCNKFSSAF ETAEHETPRM PPIRPPEKRQ RVPSAYNRFI  120
KEEIQRIKAS NPDISHREAF STAAKNWAHF PHIHFGLKLD GNKQAKLDKA AAYAEGTQKS  180
NGFY*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006487833.11e-137PREDICTED: putative axial regulator YABBY 2 isoform X2
SwissprotQ9XFB05e-82YAB2_ARATH; Putative axial regulator YABBY 2
TrEMBLA0A067ECK41e-138A0A067ECK4_CITSI; Uncharacterized protein
STRINGVIT_06s0009g00880.t011e-104(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08465.13e-83YABBY family protein