PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g029257m
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family WRKY
Protein Properties Length: 197aa    MW: 22458.4 Da    PI: 7.0682
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g029257mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY971.2e-30101159159
                        ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                        +dDg++WrKYG+K+vk+s++pr+YY+C++ gC+vkk+ver++ed ++v++tYeg+Hnhe
  orange1.1g029257m 101 MDDGFKWRKYGKKSVKNSPNPRNYYKCSTGGCQVKKRVERDREDSSYVITTYEGTHNHE 159
                        59********************************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.3E-3288161IPR003657WRKY domain
SuperFamilySSF1182901.11E-2794161IPR003657WRKY domain
PROSITE profilePS5081130.91796161IPR003657WRKY domain
SMARTSM007748.6E-34101160IPR003657WRKY domain
PfamPF031063.4E-24102159IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0042742Biological Processdefense response to bacterium
GO:0050832Biological Processdefense response to fungus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MNNLGSPNPN FNNFSYFPDH NIDHHQHQSS EFELSDYLLF DDHHPGFDED AYSSQSKASS  60
DKIIMGGSSS GATSEKNNMR KMKMEVGQRF AFRTKSELEV MDDGFKWRKY GKKSVKNSPN  120
PRNYYKCSTG GCQVKKRVER DREDSSYVIT TYEGTHNHES PCVVYDYYNH HQQQMPQNGW  180
TLQPNSSSSP PSSSSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A5e-2591161777Probable WRKY transcription factor 4
2lex_A5e-2591161777Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Involved in defense responses. May act as positive regulator of salicylic acid (SA)-mediated signaling and negative regulator of jasmonic acid (JA)-mediated signaling (PubMed:21030507). {ECO:0000250, ECO:0000269|PubMed:21030507}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006427979.21e-134probable WRKY transcription factor 50
RefseqXP_006464492.11e-134probable WRKY transcription factor 50
SwissprotQ93WU91e-42WRK51_ARATH; Probable WRKY transcription factor 51
TrEMBLA0A067DSR17e-84A0A067DSR1_CITSI; Uncharacterized protein (Fragment)
STRINGXP_006464492.11e-134(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM57112747
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64810.11e-41WRKY DNA-binding protein 51
Publications ? help Back to Top
  1. Yan C, et al.
    Injury Activates Ca2+/Calmodulin-Dependent Phosphorylation of JAV1-JAZ8-WRKY51 Complex for Jasmonate Biosynthesis.
    Mol. Cell, 2018. 70(1): p. 136-149.e7
    [PMID:29625034]