PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g028727m
Common NameCISIN_1g028727mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family NF-YC
Protein Properties Length: 206aa    MW: 22928.7 Da    PI: 9.1034
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g028727mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC37.36e-121051871799
              NF-YC  17 knhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprd 99 
                        k  ++P+ rik+i+k++     i+ ea  l+ ka + f+ ++   ++  + + ++++l    +aa+v++  ++dfl d vp++
  orange1.1g028727m 105 KVCNFPMGRIKRIFKTQSSDIGITGEAVFLVNKATDKFLEQFCEDAYECCAKDRKKSLAYKHLAAVVSEQSKYDFLSDYVPEK 187
                        4679*************9999***********************************************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471131.21E-1561180IPR009072Histone-fold
Gene3DG3DSA:1.10.20.101.1E-21109186IPR009072Histone-fold
PfamPF008082.6E-14109171IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MASSKKRKEE KAKLKNAETR KKAKPSPKKP KQSNKKTAIQ NGTVSESKDE VVVTPASSSI  60
NDSQQDSETE QEGRSQEQEA TNEKKKKPNK NGKKIERDDD DEVSKVCNFP MGRIKRIFKT  120
QSSDIGITGE AVFLVNKATD KFLEQFCEDA YECCAKDRKK SLAYKHLAAV VSEQSKYDFL  180
SDYVPEKIKA EDALAQRELA EGGEG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11021KAKLKNAETRKK
22431PSPKKPKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.102500.0fruit| stem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006488121.11e-146PREDICTED: DNA polymerase epsilon subunit C isoform X1
TrEMBLA0A067G0T91e-147A0A067G0T9_CITSI; Uncharacterized protein
STRINGPOPTR_0009s01750.11e-38(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM111902231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07980.12e-30nuclear factor Y, subunit C10