PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g027532m
Common NameCISIN_1g022353mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family WRKY
Protein Properties Length: 223aa    MW: 25427.3 Da    PI: 5.7583
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g027532mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.31e-303290259
                       --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY  2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59
                       +D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+vers+ dp+++ itY+ eHnh+
  orange1.1g027532m 32 SDSWAWRKYGQKPIKGSPYPRGYYRCSSSkGCPARKQVERSSVDPSMLLITYSCEHNHP 90
                       69*************************998****************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.2E-312592IPR003657WRKY domain
PROSITE profilePS5081132.0532692IPR003657WRKY domain
SuperFamilySSF1182903.27E-262792IPR003657WRKY domain
SMARTSM007747.5E-363191IPR003657WRKY domain
PfamPF031064.6E-263390IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MMSRRAMQKR VISVPIKEVE GSRLKGESAP PSDSWAWRKY GQKPIKGSPY PRGYYRCSSS  60
KGCPARKQVE RSSVDPSMLL ITYSCEHNHP WPLPSTSRNH HHHHHNSKAA KPDRDPEPEP  120
EPEPEPEPEH EEKFTDLADH DNALMTTSAD EFTWFGEMET TTSTILESPI FADRSQSDCD  180
SLSMFFPMRE EDESLFADLG ELPECSMVFR RHRNLGPEVQ IC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B7e-21992679Disease resistance protein RRS1
5w3x_D7e-21992679Disease resistance protein RRS1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.90790.0callus| fruit
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00167DAPTransfer from AT1G29280Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006467614.11e-164probable WRKY transcription factor 65
SwissprotQ9LP566e-83WRK65_ARATH; Probable WRKY transcription factor 65
TrEMBLA0A067GDX11e-164A0A067GDX1_CITSI; Uncharacterized protein
STRINGXP_006467614.11e-163(Citrus sinensis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29280.14e-85WRKY DNA-binding protein 65
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Singh V,Roy S,Singh D,Nandi AK
    Arabidopsis flowering locus D influences systemic-acquired-resistance- induced expression and histone modifications of WRKY genes.
    J. Biosci., 2014. 39(1): p. 119-26
    [PMID:24499796]