PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g027399m
Common NameCISIN_1g027399mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family LBD
Protein Properties Length: 225aa    MW: 24617.3 Da    PI: 6.4964
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g027399mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260125.13.4e-3971071100
             DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 
                        +C aCk+lrrkC+k+Cv+apyf++eq + +fa++hk+FGasnv+kll++lp ++r +a+ ++ yeA+ar++dP+yG+v++i++lq+q+ +l+
  orange1.1g027399m   7 PCGACKFLRRKCVKGCVFAPYFCHEQgATHFAAIHKVFGASNVSKLLAHLPVSDRCEAAVTISYEAQARLQDPIYGCVSHIFALQHQVVNLQ 98 
                        7*************************89**************************************************************** PP

             DUF260  92 aelallkee 100
                        a+la+lke+
  orange1.1g027399m  99 AQLASLKEQ 107
                        ****99987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.1116108IPR004883Lateral organ boundaries, LOB
PfamPF031951.4E-377105IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010311Biological Processlateral root formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MTGSGSPCGA CKFLRRKCVK GCVFAPYFCH EQGATHFAAI HKVFGASNVS KLLAHLPVSD  60
RCEAAVTISY EAQARLQDPI YGCVSHIFAL QHQVVNLQAQ LASLKEQAAQ SILNGSVTTN  120
PNHEKYYGKL PSHPQDVQSW FHHQEDSDME RLFSSNLHNQ GAATMPYCTD QNGFMNPNSL  180
GNSYENSAIA SFGEASHSMG TFEQWSFQDS DDLQSVAFGY IQNS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006480093.11e-165PREDICTED: LOB domain-containing protein 29-like
RefseqXP_006443870.11e-165hypothetical protein CICLE_v10023341mg
SwissprotQ9M2J75e-75LBD29_ARATH; LOB domain-containing protein 29
TrEMBLA0A067FYE51e-169A0A067FYE5_CITSI; Uncharacterized protein
STRINGPOPTR_0002s04200.11e-111(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10828359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58190.13e-76lateral organ boundaries-domain 29