PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g026846m
Common NameCISIN_1g026846mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family C2H2
Protein Properties Length: 233aa    MW: 26608 Da    PI: 5.4158
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g026846mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.65e-062549123
                       EEET..TTTEEESSHHHHHHHHHHT CS
            zf-C2H2  1 ykCp..dCgksFsrksnLkrHirtH 23
                       + Cp  dCgk++ + + Lk+Hi +H
  orange1.1g026846m 25 HICPypDCGKRYAHEYKLKNHIASH 49
                       679999*****************96 PP

2zf-C2H213.80.0001788113123
                        EEET..TTTEEESSHHHHHHHHHH.T CS
            zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                        y Cp   C k + + + Lk H+++ H
  orange1.1g026846m  88 YACPyeGCEKAYIHEYKLKLHLKReH 113
                        89*********************999 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.17E-9551No hitNo description
Gene3DG3DSA:3.30.160.601.4E-111151IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.00282549IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.4732554IPR007087Zinc finger, C2H2
PROSITE patternPS0002802750IPR007087Zinc finger, C2H2
SuperFamilySSF576673.73E-683111No hitNo description
Gene3DG3DSA:3.30.160.602.4E-984110IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.01288113IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.6688118IPR007087Zinc finger, C2H2
PROSITE patternPS00028090113IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MKAVAFSLDF NLRSHMKTHS QENYHICPYP DCGKRYAHEY KLKNHIASHH EKNAAVEVPR  60
YATPPERITK TPKPPAGVYG SASSERPYAC PYEGCEKAYI HEYKLKLHLK REHPGHMSDE  120
NAENATTNAD NEMDEGSDQD AYAGKRVNGK SQKQSRAKPN LKMPPAKVTQ RKSSTPSPAT  180
LNVVRKQQWT PKEEVYEEED SEETEEDRDN VEDGFRYGEN NEDDDEETEY ED*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006494375.11e-169PREDICTED: uncharacterized zinc finger protein At4g06634-like
SwissprotQ2V3L32e-83Y4634_ARATH; Uncharacterized zinc finger protein At4g06634
TrEMBLA0A067D3R61e-174A0A067D3R6_CITSI; Uncharacterized protein
STRINGPOPTR_0004s23050.11e-116(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58592846
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G06634.21e-76C2H2 family protein