PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g023564m
Common NameCISIN_1g015878mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family E2F/DP
Protein Properties Length: 281aa    MW: 31219.1 Da    PI: 7.9
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g023564mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP862.8e-27128193171
            E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 
                        r+++sL+llt+kf++l++++++g+++ln  a+ L   +v  ++RRiYDi+NVLe+++liek++kn+irwkg
  orange1.1g023564m 128 RYDSSLGLLTRKFINLIQEAKDGTLDLNRTAEVL---EV--QKRRIYDITNVLEGIGLIEKTSKNHIRWKG 193
                        6899******************************...99..****************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.107.7E-29125195IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.72E-18128191IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013721.1E-35128193IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023192.0E-25130193IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF1440746.28E-11205265No hitNo description
PfamPF164215.7E-8209261IPR032198E2F transcription factor, CC-MB domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000902Biological Processcell morphogenesis
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042023Biological ProcessDNA endoreduplication
GO:0051782Biological Processnegative regulation of cell division
GO:0005667Cellular Componenttranscription factor complex
GO:0005730Cellular Componentnucleolus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MKSSPSTTSL GANRNYHSLL GKIPLSSNQN NTLNVNSNST DIDICNKIED THSAFSRLEL  60
KQTNELANHA AQNIARRDKV VNAPSLEPES CASGKSNRKL KGLKSTKSGT QGSNADAPNG  120
LNLSNGCRYD SSLGLLTRKF INLIQEAKDG TLDLNRTAEV LEVQKRRIYD ITNVLEGIGL  180
IEKTSKNHIR WKGSDSLGTS KLDDQVARLK AEIESLHAEE CRIDDSIREK QELIRTLEEN  240
ENHQKYMFLT EEDIASLPCF QVIAVNLRIY LKSIFSYLLN *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_A7e-26128193773PROTEIN (TRANSCRIPTION FACTOR E2F-4)
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00190DAPTransfer from AT1G47870Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006473646.10.0PREDICTED: transcription factor E2FC
SwissprotQ9FV707e-70E2FC_ARATH; Transcription factor E2FC
TrEMBLA0A067GZ220.0A0A067GZ22_CITSI; Uncharacterized protein
STRINGVIT_18s0001g14110.t012e-89(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G47870.21e-70E2F/DP family protein