PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g022353m
Common NameCISIN_1g022353mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family WRKY
Protein Properties Length: 299aa    MW: 33998.5 Da    PI: 5.6885
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g022353mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.61.7e-3079137259
                        --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                        +D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+vers+ dp+++ itY+ eHnh+
  orange1.1g022353m  79 SDSWAWRKYGQKPIKGSPYPRGYYRCSSSkGCPARKQVERSSVDPSMLLITYSCEHNHP 137
                        69*************************998****************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.1E-3172139IPR003657WRKY domain
PROSITE profilePS5081132.05373139IPR003657WRKY domain
SuperFamilySSF1182905.62E-2674139IPR003657WRKY domain
SMARTSM007747.5E-3678138IPR003657WRKY domain
PfamPF031067.7E-2680137IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MDGRFNSNSN PFTGEQEEND TTPENSSESP PSSSTYNDMM KMTSTSSPKK RRAMQKRVIS  60
VPIKEVEGSR LKGESAPPSD SWAWRKYGQK PIKGSPYPRG YYRCSSSKGC PARKQVERSS  120
VDPSMLLITY SCEHNHPWPL PSTSRNHHHH HHNSKAAKPD RDPEPEPEPE PEPEPEHEEK  180
FTDLADHDNA LMTTSADEFT WFGEMETTTS TILESPIFAD RSQSDCDSLS MFFPMREEDE  240
SLFADLGELP ECSMVFRRHR NLGPEVQQNF LHPHLSPWPS CSQYGRFESA LQQMHCPH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B2e-2056139679Disease resistance protein RRS1
5w3x_D2e-2056139679Disease resistance protein RRS1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.90790.0callus| fruit
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00167DAPTransfer from AT1G29280Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006467614.10.0probable WRKY transcription factor 65
SwissprotQ9LP569e-87WRK65_ARATH; Probable WRKY transcription factor 65
TrEMBLA0A067GRD90.0A0A067GRD9_CITSI; Uncharacterized protein
STRINGXP_006467614.10.0(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM53832849
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29280.15e-86WRKY DNA-binding protein 65
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Singh V,Roy S,Singh D,Nandi AK
    Arabidopsis flowering locus D influences systemic-acquired-resistance- induced expression and histone modifications of WRKY genes.
    J. Biosci., 2014. 39(1): p. 119-26
    [PMID:24499796]