PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g022059m
Common NameCISIN_1g0112712mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family MYB_related
Protein Properties Length: 304aa    MW: 34025.6 Da    PI: 6.9552
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g022059mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding21.94.2e-07130170445
                        S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
    Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                        WT+eE ++l ++++++  + +  Ia +++  Rt +++k+r++
  orange1.1g022059m 130 WTKEETDQLFELCERFDLR-FIVIADRFPSSRTVEELKDRYY 170
                        *******************.*********************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF162825.7E-31102176IPR032563DAMP1, SANT/Myb-like domain
SuperFamilySSF466891.09E-6126172IPR009057Homeodomain-like
SMARTSM007173.2E-6126175IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.4E-6129171IPR009057Homeodomain-like
CDDcd116584.37E-19130170No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0000812Cellular ComponentSwr1 complex
GO:0035267Cellular ComponentNuA4 histone acetyltransferase complex
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MDAKDILGIP KTQLPTTQEK KSRPQKEPQR KPDGISREVY ALTGGLAPLM PSIDVSQLKK  60
RPPSDEKITW QWLPFTNSAR KDNLQLYHWV RVVNGVPPTG DYSFAKYNKS VDVVKYTDEE  120
YEKYLTDPMW TKEETDQLFE LCERFDLRFI VIADRFPSSR TVEELKDRYY GVSRAILIAR  180
APSPTDVSGH PLVKDPYNVS QEVERKRALS MVLSQTKHQE RKDAEVLAEA KRITDSRMAS  240
RAAEEPEMPV ASHVGSESAD RAVVLGDTVS PSSNIQLPSA TVVPSTSIIA DSASTLASLR  300
MVC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3hm5_A3e-22101186493DNA methyltransferase 1-associated protein 1
4iej_A3e-22101186493DNA methyltransferase 1-associated protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the SWR1 complex which mediates the ATP-dependent exchange of histone H2A for the H2A variant HZT1 leading to transcriptional regulation of selected genes by chromatin remodeling. Component of the NuA4 histone acetyltransferase complex which is involved in transcriptional activation of selected genes principally by acetylation of nucleosomal histone H4 and H2A. {ECO:0000305|Ref.5}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006444556.10.0SWR1-complex protein 4 isoform X1
RefseqXP_006492372.10.0SWR1-complex protein 4 isoform X1
SwissprotQ8VZL61e-161SWC4_ARATH; SWR1-complex protein 4
TrEMBLA0A067HFT90.0A0A067HFT9_CITSI; Uncharacterized protein
STRINGXP_006492372.10.0(Citrus sinensis)
STRINGXP_006444556.10.0(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47210.11e-163MYB_related family protein
Publications ? help Back to Top
  1. Gómez-Zambrano Á, et al.
    Arabidopsis SWC4 Binds DNA and Recruits the SWR1 Complex to Modulate Histone H2A.Z Deposition at Key Regulatory Genes.
    Mol Plant, 2018. 11(6): p. 815-832
    [PMID:29604400]