PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g021209m
Common NameCISIN_1g011420mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family MYB_related
Protein Properties Length: 317aa    MW: 35968 Da    PI: 10.3525
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g021209mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.14.1e-08189236448
                        S-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
    Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                        WT  E  +l+d++ q+G g W+ I r +     +Rt+ +++++w+++l
  orange1.1g021209m 189 WTLSEVMKLIDGISQFGVGKWTDIKRLLFsssSHRTPIDLRDKWRNLL 236
                        **********************************************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.5E-12178243IPR009057Homeodomain-like
PROSITE profilePS5129413.847181240IPR017930Myb domain
SMARTSM007172.5E-8185238IPR001005SANT/Myb domain
SuperFamilySSF466892.32E-16187246IPR009057Homeodomain-like
CDDcd116603.25E-17187237No hitNo description
PfamPF139211.9E-6189244No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MSDSSITALE SECKNDSLEK MVNCELHGTF KSKCEYQAPD MEKCPSSHDM DRFDELDSDD  60
NVLLSSILSK CKKRVKSTVL GTKVKRLRKP TKRYIEESSD LKPGSLMRGQ NVSTATLKDK  120
HPKVTPCNGS SKGSQVASES WLRGGRLKKR SPILGFESDD DIFSSDSDDD RVRKRKSKID  180
DRRKNQRMWT LSEVMKLIDG ISQFGVGKWT DIKRLLFSSS SHRTPIDLRD KWRNLLRASY  240
AHQKNKGEVD PKHAMRSLPK PVLCRIRELA TIHPYPRVPY SKKCNGDTDS SRHPIKAKSA  300
PFSSHGRNLR TTIKEQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1173183KRKSKIDDRRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.50300.0callus| seed| stem| vegetative meristem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006428745.10.0uncharacterized protein LOC18039657 isoform X2
RefseqXP_006428746.10.0uncharacterized protein LOC18039657 isoform X2
RefseqXP_006481484.10.0uncharacterized protein LOC102617973 isoform X2
RefseqXP_006481485.10.0uncharacterized protein LOC102617973 isoform X2
RefseqXP_015386899.10.0uncharacterized protein LOC102617973 isoform X3
TrEMBLA0A067DYJ30.0A0A067DYJ3_CITSI; Uncharacterized protein
TrEMBLA0A067DYY10.0A0A067DYY1_CITSI; Uncharacterized protein
TrEMBLV4SMT40.0V4SMT4_9ROSI; Uncharacterized protein
STRINGXP_006481484.10.0(Citrus sinensis)
STRINGXP_006428745.10.0(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.14e-24TRF-like 6