PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g020291m
Common NameCISIN_1g020291mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family WRKY
Protein Properties Length: 329aa    MW: 36807.7 Da    PI: 6.3178
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g020291mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY76.33.6e-24141201259
                        --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                        dDg++WrKYGqK++ +++fpr+Y+rCt++   gC++ k+v+r +e+p +  +tY g+H+++
  orange1.1g020291m 141 DDGHAWRKYGQKVILNARFPRNYFRCTHKfdqGCQASKQVQRIQEEPPLHRTTYYGRHTCK 201
                        8***************************9999***************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.7E-25130201IPR003657WRKY domain
SuperFamilySSF1182902.88E-24134201IPR003657WRKY domain
PROSITE profilePS5081120.254135198IPR003657WRKY domain
SMARTSM007747.9E-36140202IPR003657WRKY domain
PfamPF031063.2E-23141201IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MKMEAGQATS SSSWLENSSD RRRAIEELIK GQEMALQLRN LIHTSTKKGE GSKAMIINQD  60
LVANILSSFT NSLSILKNGD SDEASQVQEH TQLSSPCWEA YLKTEDSGES SKSSTVKDRR  120
GCYKRRKCAE SWTEHSSTLT DDGHAWRKYG QKVILNARFP RNYFRCTHKF DQGCQASKQV  180
QRIQEEPPLH RTTYYGRHTC KSLIKSSQLM LDSTTSDQCP MISFGSAHIT EKDFNPFLSS  240
FPSIKQESNK DDQGPLSDMT HNQSSSSDEY LVSHDFPAFE SNEHMKVLSS DHGDVISGVN  300
SSCTASAHSL DLAVDMSVNF DDVLEFNF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A8e-21141201969OsWRKY45
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.135020.0leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKU1738330.0KU173833.1 Citrus grandis cultivar Shatinyu Hort WRKY transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006429596.20.0probable WRKY transcription factor 70
RefseqXP_006481203.10.0probable WRKY transcription factor 70
TrEMBLA0A067FLP80.0A0A067FLP8_CITSI; Uncharacterized protein
STRINGXP_006481203.10.0(Citrus sinensis)
STRINGXP_006429596.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM167191012
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.13e-42WRKY DNA-binding protein 70