PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g019823m
Common NameCISIN_1g019823mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family Trihelix
Protein Properties Length: 336aa    MW: 39534.6 Da    PI: 4.3062
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g019823mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix39.12e-12108192286
           trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                        Wt++e  +L+e+  e+  +l+r++l+  +W evs+k+ ++ ++e++  qC++ ++ l+++ykk+k   ++   ++s ++++f++++
  orange1.1g019823m 108 WTEHEAFVLLEIWGERFLQLGRKSLRSEDWVEVSEKVtEALKVEKTEAQCRQMMDVLKRKYKKEKVKVEQMGVNDS-KWVFFKKMD 192
                        *************************************77899***********************88888755555.8*******8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138378.4E-18107194No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MDDTEDDARY PPKPYSLNRQ KVPSYSRPIK NRYQYEEEDE DDEIEDRIEE ENEEEEGGYH  60
VQFNDQSAYR HNFNESENFE RYPKRQRLRS SGSGYRLAPR SVKLSYDWTE HEAFVLLEIW  120
GERFLQLGRK SLRSEDWVEV SEKVTEALKV EKTEAQCRQM MDVLKRKYKK EKVKVEQMGV  180
NDSKWVFFKK MDMLMDMRKE SGGLACGIDS GEYVFMDTNV YLDRSNGFDE MRDSPSESEV  240
EEEEDDSNEG SLASLKMLAD SVNKFGDIYE KIENSKREQM MELEKMRMDF QKELELQKKQ  300
ILERAQLEIE KIREGDDDGD TDDGGDGDSM GNFSE*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.85670.0callus| leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006475708.10.0trihelix transcription factor ASIL1
TrEMBLA0A067EG920.0A0A067EG92_CITSI; Uncharacterized protein
STRINGXP_006475708.10.0(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM97792733
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24490.16e-93Trihelix family protein