PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g018103m
Common NameCISIN_1g018103mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family ERF
Protein Properties Length: 361aa    MW: 39978.5 Da    PI: 6.7961
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g018103mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP267.42.8e-21165215256
                AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                         y+GVr+++ +g+WvAeIr p++   r+r +lg+f+taeeAa a+++a+ kl+ge
  orange1.1g018103m 165 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDTAEEAALAYDQAAYKLRGE 215
                        59******9.**********965...5**************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.79E-34164224No hitNo description
PROSITE profilePS5103223.182165222IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.7E-32165223IPR001471AP2/ERF domain
SMARTSM003801.2E-38165228IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-23165223IPR016177DNA-binding domain
PRINTSPR003673.5E-11166177IPR001471AP2/ERF domain
PfamPF008475.8E-15166215IPR001471AP2/ERF domain
PRINTSPR003673.5E-11188204IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MAAAIDMYNS SRSISDPFRE ELMKALEPFM KIASSNCSSS SGFSSSSYSS YSSYSSYSPT  60
TSSEANFFYP DGYNLCSPSY DTPMFSQGLM SFEQQPISSL GLNHLTPSQI LQIQAQINFQ  120
QQQQQQVASL ASRASISSPK SNLLSPKAVP MKHVSNAQVA KPTKLYRGVR QRHWGKWVAE  180
IRLPKNRTRL WLGTFDTAEE AALAYDQAAY KLRGEFARLN FPHLKHHGAH VTGEFGDYKP  240
LHASVDAKLQ AICQNLALNN NVQKQTSKQQ QQQQQEAETK PVLLPATAAN IKVENTSATS  300
LSSPTPDHSL SDAGSSSPES DVSFLDFNDT KWETEMDAFG LEKYPSVEID WEAIRKLSEF  360
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-21164222160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.64645e-42callus| flower| fruit| stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006428165.10.0ethylene-responsive transcription factor RAP2-4
RefseqXP_006464216.10.0ethylene-responsive transcription factor RAP2-4-like
TrEMBLA0A067EZG00.0A0A067EZG0_CITSI; Uncharacterized protein
STRINGXP_006464216.10.0(Citrus sinensis)
STRINGXP_006428165.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM26802768
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39780.11e-66ERF family protein