PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g014097m
Common NameCISIN_1g011420mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family MYB_related
Protein Properties Length: 431aa    MW: 47909.8 Da    PI: 6.0897
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g014097mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.56.4e-08359406448
                        S-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
    Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                        WT  E  +l+d++ q+G g W+ I r +     +Rt+ +++++w+++l
  orange1.1g014097m 359 WTLSEVMKLIDGISQFGVGKWTDIKRLLFsssSHRTPIDLRDKWRNLL 406
                        **********************************************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.609.1E-12348413IPR009057Homeodomain-like
PROSITE profilePS5129413.847351410IPR017930Myb domain
SMARTSM007172.5E-8355408IPR001005SANT/Myb domain
CDDcd116608.30E-18357407No hitNo description
SuperFamilySSF466896.65E-16357414IPR009057Homeodomain-like
PfamPF139213.7E-6359413No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 431 aa     Download sequence    Send to blast
MDKGPLLLEN VRNMTSQRVK VEESFVPAFK DKAAEVSNLL AEPKCDHASV DGVLSFGREN  60
LGKSSGMDGF SYEFEFGFRT NCGGLDSFTT QGEDDLKLEV LDGLLDDIDE VDDFHAANDL  120
STVCDDFLLD IEFTEKVAKF DCGPVEGSHL GNSSSESHSP GASGSNVAVG MSDSSITALE  180
SECKNDSLEK MVNCELHGTF KSKCEYQAPD MEKCPSSHDM DRFDELDSDD NVLLSSILSK  240
CKKRVKSTVL GTKVKRLRKP TKRYIEESSD LKPGSLMRGQ NVSTATLKDK HPKVTPCNGS  300
SKGSQVASES WLRGGRLKKR SPILGFESDD DIFSSDSDDD RVRKRKSKID DRRKNQRMWT  360
LSEVMKLIDG ISQFGVGKWT DIKRLLFSSS SHRTPIDLRD KWRNLLRASY AHQKNKGEVR  420
FLSYFSVPLT *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1343353KRKSKIDDRRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.50307e-91callus| seed| stem| vegetative meristem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006428745.10.0uncharacterized protein LOC18039657 isoform X2
RefseqXP_006428746.10.0uncharacterized protein LOC18039657 isoform X2
RefseqXP_006481484.10.0uncharacterized protein LOC102617973 isoform X2
RefseqXP_006481485.10.0uncharacterized protein LOC102617973 isoform X2
TrEMBLA0A067E2I30.0A0A067E2I3_CITSI; Uncharacterized protein
STRINGXP_006481484.10.0(Citrus sinensis)
STRINGXP_006428745.10.0(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.29e-20TRF-like 6