PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g013190m
Common NameCISIN_1g007099mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family WRKY
Protein Properties Length: 449aa    MW: 48404.9 Da    PI: 7.2232
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g013190mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.49.3e-31190248259
                        --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                         Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed +++++tYeg+Hnh+
  orange1.1g013190m 190 TDGCQWRKYGQKMAKGNPCPRAYYRCTMAvGCPVRKQVQRCAEDRTILITTYEGNHNHP 248
                        7*********************************************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.7E-33174250IPR003657WRKY domain
SuperFamilySSF1182909.42E-28182250IPR003657WRKY domain
PROSITE profilePS5081129.516184250IPR003657WRKY domain
SMARTSM007741.5E-36189249IPR003657WRKY domain
PfamPF031061.8E-26191248IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 449 aa     Download sequence    Send to blast
MNTENQRLRD MLSQVTNNYN ALQMHIIALM QQQQENRRAP ESNQAHEVVE GKDEGKKHDD  60
QVMVPRQFIG LGPSAETDHE VSNCSSDEER TLSGTPPNIV EAASKEHVNS NGKNEIVSFD  120
DQAAAAAAAE NSNGKRIGRE ESPESETQGW GPNNKVQKLS SAKGIDQSNE ATMRKARVSV  180
RARSEAPMIT DGCQWRKYGQ KMAKGNPCPR AYYRCTMAVG CPVRKQVQRC AEDRTILITT  240
YEGNHNHPLP PAAMAMASTT TAAASMLLSG SMSSADGIMN PNLLARAILP CSSSMATISA  300
SAPFPTVTLD LTHSPNPLQL QRQAAQFQVQ FPGQPQNLAS VTNTQLPQVF GQALYNQSKF  360
SGLQLSQNIG SNSQSGSHQT LPPPLQQPQQ LADTVSAATA AITADPNFTA ALAAAITSII  420
GGAQNPFSNN SNNNNRSCII FTNFFFQY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A4e-23176252176WRKY transcription factor 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.10530.0fruit| vegetative meristem
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Modulates phosphate homeostasis and Pi translocation by regulating PHO1 expression (PubMed:25733771). {ECO:0000250, ECO:0000269|PubMed:25733771}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00428DAPTransfer from AT4G04450Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006467403.10.0probable WRKY transcription factor 31
SwissprotQ9XEC31e-136WRK42_ARATH; WRKY transcription factor 42
TrEMBLA0A067GFB60.0A0A067GFB6_CITSI; Uncharacterized protein
STRINGXP_006467403.10.0(Citrus sinensis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04450.11e-109WRKY family protein