PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g011623m
Common NameCISIN_1g011623mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family MYB_related
Protein Properties Length: 482aa    MW: 54678.2 Da    PI: 4.2719
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g011623mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.11.7e-07321369247
                        SSS-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding   2 grWTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrwqky 47 
                        ++WT+eE+ ++ ++v  ++       W+  +  ++  Rt ++++s+++++
  orange1.1g011623m 321 KNWTKEEENKFHEVVSSYPVSmgknFWDHLSLVFP-SRTKNELVSYYFNV 369
                        68***************98878888**********.***********996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007173.3E-6319372IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.7E-5320378IPR009057Homeodomain-like
SuperFamilySSF466897.48E-6320370IPR009057Homeodomain-like
PfamPF002494.9E-6321369IPR001005SANT/Myb domain
PROSITE profilePS500906.4322370IPR017877Myb-like domain
CDDcd001671.92E-8322370No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 482 aa     Download sequence    Send to blast
MLCAETRYYI ENLLSSIVGN YKVVFFKLQI YKALDLISES SENNCDFQGE MIHKRPFLDE  60
DCFEFPCKHP KQWECTNYLA PMVHMSPPAD GHQKPQTSGN GDGEQNINRC RDQGRFLFGP  120
VAEVSNGTEK EFEIGSDCIS PLFWANGLFA EGDANSEEVY LSLFPEYFAT EHQIRTFLQS  180
DEIYSSHLDH PPVKSVSIGP EYQADVPEWC LQGSKNSLAH LDGSDHQVRL ERLSGSCLVV  240
DDVQGEKLLG TCVVSMPDSA PSANYYSQSL VTRNDCECLD KGSIRCVRQH VMEAREKLRV  300
NLGHKIFEEL GFHEMGEEVS KNWTKEEENK FHEVVSSYPV SMGKNFWDHL SLVFPSRTKN  360
ELVSYYFNVF ILQKRAEQNR FDPLNIDSDD DEWQRCDLGA AEEDEESGVE FLSNRGVSAY  420
QQDDHVENCQ DDTEGGYLID DCKNDANVVH TVATDEEEDG DVDDIPEPHV RDLFSHSSTD  480
T*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.119710.0seed
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006431271.10.0uncharacterized protein LOC18039444
TrEMBLA0A067GBK80.0A0A067GBK8_CITSI; Uncharacterized protein
STRINGXP_006431271.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1718322