PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g010767m
Common NameCISIN_1g007452mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family MYB_related
Protein Properties Length: 503aa    MW: 52109.8 Da    PI: 8.3751
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g010767mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.71.5e-09103148145
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.TTS-HHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg.kgRtlkqcksrwq 45 
                        r++WT+eEd+ l+ av++ G g+W+ I r      Rt+ q+  rw+
  orange1.1g010767m 103 RKPWTAEEDLELISAVQKCGEGNWANILRGDFkWDRTASQLSQRWN 148
                        789************************9843235677777777775 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.61698155IPR017930Myb domain
SuperFamilySSF466892.42E-1399152IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.0E-1499153IPR009057Homeodomain-like
SMARTSM007171.8E-10102153IPR001005SANT/Myb domain
PfamPF002492.6E-8103148IPR001005SANT/Myb domain
CDDcd116604.67E-13104152No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 503 aa     Download sequence    Send to blast
MVLLVQLIIL RGCSFGQVLI ASGLPSDSSL PNSSMVEAPL TINIPNGQSL RASTENSQPS  60
SLMQGMNITV PVAVQKVPLP APTPEVLDAN GLIGGSMPPR KKRKPWTAEE DLELISAVQK  120
CGEGNWANIL RGDFKWDRTA SQLSQRWNIL RKKHGNVILG SNSSGSQLSE AQLAARHAMS  180
LALDMPVKNI TASCTNTTAG TTSSATMNNP VPSTANAEAS SVANQSKLSP VGSPGSAVKS  240
RVPLKKMPAK SNFGADSSIR AAAVAAGARI VTPSDAASLL KVAQAKKAIH IMPSGVSSIK  300
SPSAGSASAH LEASPTTRYV RPSLPAVPSS SSPAVTSSAS HPGLVKAALP KVQHNTSCEQ  360
TNAVVSVPAT ELQLKPEVKA GEEIKVSGCS VSGNEPSKEI QLDLPKLDAE FKNQAAVAEN  420
PDSSSNMEIV ENGQVQSNGN QPEGNGNQNG NDDKMVDSPV ANGENQAAVK QKNSGLPQSS  480
NNEEAELPTL VIDKCSSKNL EV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
198104PRKKRKP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006472453.10.0uncharacterized protein LOC102617361 isoform X1
TrEMBLA0A067H0J10.0A0A067H0J1_CITSI; Uncharacterized protein
STRINGXP_006472453.10.0(Citrus sinensis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09710.12e-39MYB_related family protein