PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g010139m
Common NameCISIN_1g007452mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family MYB_related
Protein Properties Length: 518aa    MW: 53713.1 Da    PI: 5.5384
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g010139mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.71.5e-09118163145
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.TTS-HHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg.kgRtlkqcksrwq 45 
                        r++WT+eEd+ l+ av++ G g+W+ I r      Rt+ q+  rw+
  orange1.1g010139m 118 RKPWTAEEDLELISAVQKCGEGNWANILRGDFkWDRTASQLSQRWN 163
                        789************************9843235677777777775 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.616113170IPR017930Myb domain
SuperFamilySSF466892.55E-13114167IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.1E-14114168IPR009057Homeodomain-like
SMARTSM007171.8E-10117168IPR001005SANT/Myb domain
PfamPF002492.7E-8118163IPR001005SANT/Myb domain
CDDcd116604.96E-13119167No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 518 aa     Download sequence    Send to blast
MIQDDDSDLE YELEAFPEVS SEASTEAAAC VKVLIASGLP SDSSLPNSSM VEAPLTINIP  60
NGQSLRASTE NSQPSSLMQG MNITVPVAVQ KVPLPAPTPE VLDANGLIGG SMPPRKKRKP  120
WTAEEDLELI SAVQKCGEGN WANILRGDFK WDRTASQLSQ RWNILRKKHG NVILGSNSSG  180
SQLSEAQLAA RHAMSLALDM PVKNITASCT NTTAGTTSSA TMNNPVPSTA NAEASSVANQ  240
SKLSPVGSPG SAVKSRVPLK KMPAKSNFGA DSSIRAAAVA AGARIVTPSD AASLLKVAQA  300
KKAIHIMPSG VSSIKSPSAG SASAHLEASP TTRYVRPSLP AVPSSSSPAV TSSASHPGLV  360
KAALPKVQHN TSCEQTNAVV SVPATELQLK PEVKAGEEIK VSGCSVSGNE PSKEIQLDLP  420
KLDAEFKNQA AVAENPDSSS NMEIVENGQV QSNGNQPEGN GNQNGNDDKM VDSPVANGEN  480
QAAVKQKNSG LPQSSNNEEA ELPTLVIDKC SSKNLEV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1113119PRKKRKP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024952686.10.0uncharacterized protein LOC102617361 isoform X2
TrEMBLA0A067GRA90.0A0A067GRA9_CITSI; Uncharacterized protein
STRINGXP_006472453.10.0(Citrus sinensis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09710.19e-47MYB_related family protein