PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g009794m
Common NameCISIN_1g009794mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family WRKY
Protein Properties Length: 526aa    MW: 56855 Da    PI: 7.9584
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g009794mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.22.3e-30169228159
                        ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                        ++Dg++WrKYGqK  kg+++pr+YYrCt a +Cpv+k+v+r+aed +v+++tYeg+Hnh+
  orange1.1g009794m 169 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVApSCPVRKQVQRCAEDMSVLITTYEGTHNHP 228
                        58***************************99****************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.0E-31154230IPR003657WRKY domain
SuperFamilySSF1182902.48E-27162230IPR003657WRKY domain
PROSITE profilePS5081128.483164230IPR003657WRKY domain
SMARTSM007741.6E-36169229IPR003657WRKY domain
PfamPF031067.1E-27170228IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 526 aa     Download sequence    Send to blast
MGEVRQENER LKMYLNRIMK DYQTLQTQFV NIVHQEAKKS TETSNDHDRD KEEVELVSLS  60
LGRFPSDSKK DEKNKTSSLV KEEEQFQEGL SLALDCKFEA SNKSDANESL TNPSPAQSLE  120
EPKEEAGETW PPSKGLNKTM RNGDDEMLQQ SHVKKARVSV RARCDTPTMN DGCQWRKYGQ  180
KIAKGNPCPR AYYRCTVAPS CPVRKQVQRC AEDMSVLITT YEGTHNHPLP VSATAMASTT  240
SAAASMLLSG STSSSSSSSR PGSTAAITAP NNLLMHGLNF YLSDKSKQIY APNSSSSLSA  300
SPLHPTITLD LTTTTAPSSS SSPFSRFTSN YPPAPRYSST NLNFSSTESS SLMSWSNNGL  360
LSYGSCTQPY IKNNQIGSLN MGSRQPADNI FQSYMQKNNP NPNLPPQQSL PAETIAAATK  420
AITADPSFQS ALAVALKSII GNGNGSGVNN NQVNGDNLGQ KLKWGEQFLE TVKGGGCATS  480
YLNKSSSASS HHQPGSLIFL PPNSLPFSTS KSASASPADD REHTD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-20156230174WRKY transcription factor 1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, trichomes and fruits. {ECO:0000269|PubMed:24884371}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in the transcriptional regulation of terpene biosynthesis in glandular trichomes (PubMed:24884371). Binds to the promoter of the linalool synthase TPS5 and promotes TPS5 gene transactivation (PubMed:24884371). In association with WRKY72B, contributes to basal defense against root-knot nematodes (RKNs) and potato aphids, as well as Mi-1-mediated gene-for-gene resistance to these pests (PubMed:20409007). Both WRKY72A and WRKY72B are not required for gene-for-gene resistance mediated by Pto, another tomato R gene (PubMed:20409007). {ECO:0000269|PubMed:20409007, ECO:0000269|PubMed:24884371}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by infection with the root-knot nematode (RKN) Meloidogyne incognita and potato aphids. {ECO:0000269|PubMed:20409007}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006476643.10.0probable WRKY transcription factor 61
SwissprotA0A3Q7GFB51e-125WK72A_SOLLC; WRKY transcription factor 72A
TrEMBLA0A067GL640.0A0A067GL64_CITSI; Uncharacterized protein
STRINGXP_006476643.10.0(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29592868
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15130.12e-67WRKY DNA-binding protein 72
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Spyropoulou EA,Haring MA,Schuurink RC
    RNA sequencing on Solanum lycopersicum trichomes identifies transcription factors that activate terpene synthase promoters.
    BMC Genomics, 2014. 15: p. 402
    [PMID:24884371]