PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g006474m
Common NameCISIN_1g006062mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family MYB_related
Protein Properties Length: 644aa    MW: 70384.1 Da    PI: 8.4562
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g006474mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.24.4e-09528576348
                        SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
    Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                        +WT  E  +lv++v ++G g+W+ I r        Rt  ++k++w+++l
  orange1.1g006474m 528 AWTLSEVMKLVEGVSKYGAGRWSEIKRLAFasySYRTSVDLKDKWRNLL 576
                        7****************************99**99************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.494521580IPR017930Myb domain
SuperFamilySSF466891.87E-16523592IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.8E-13523583IPR009057Homeodomain-like
SMARTSM007178.3E-10525578IPR001005SANT/Myb domain
CDDcd116609.00E-20527577No hitNo description
PfamPF002494.1E-7528576IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 644 aa     Download sequence    Send to blast
METLVGAEGN GEGQFKESRI HKTNSTFSSP NLGADPVVYK LVRVDGDGKL VPATDDELME  60
VGNLLADDKI EMHLVADAGP TGRCIFNERS SSGMPKLESS EGLSNSENAE ADAGKLNTHL  120
ESIEEMLTKA KQEESHLLAC GSPDHSSTYV LVDGQCSDQH DTLRGIDEKL QSEIPLQESD  180
LSSQSLSKSL NNQPSIHGEC SNSSNGLVEG QRSTSAVYTS SKPEFSRLMG EICLDNLSIK  240
ELHETFKATF GRETTVKDKQ WLKRRIAMGL TNSCDVSTSS FIIKDNKLVS KGGEGSCNKE  300
AIEDQAVKPV DGSGKESSLN PGSKMEDQQI VSSERLRTCS KDYSCADEDP LKEQRNAKRI  360
RKPTRRYIEE LSEVESKEHG GKSIASVKNL GLGLMSSRSN TRPVRIASSN RITLRLDSLG  420
GSGVQIPYVS RVRRSRPRKN VKALMEFHPN GIGMAAKLVK EAVDVHSSEP NRESGGIVLK  480
ASSAPEQIQQ QGQNMEPKNK DPSVYTPDDN PATVRAVKGG VRRKHHRAWT LSEVMKLVEG  540
VSKYGAGRWS EIKRLAFASY SYRTSVDLKD KWRNLLKASL AQTPPDSRMG ARKHASSVPI  600
PMPVLLRVRE LAEMQSQFPP NLSSSKLTGS AGRNVNETRS GYL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1432438RRSRPRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.19900.0fruit
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006465936.10.0uncharacterized protein LOC102630482 isoform X2
TrEMBLA0A067FCJ80.0A0A067FCJ8_CITSI; Uncharacterized protein
STRINGXP_006465933.10.0(Citrus sinensis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.21e-115TRF-like 6