PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g005668m
Common NameCISIN_1g005668mg, LOC102609075
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family MYB_related
Protein Properties Length: 685aa    MW: 77770.1 Da    PI: 10.1754
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g005668mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.83.8e-111464246
                       SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT......TTS-HHHHHHHHHH CS
    Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmg......kgRtlkqcksrwqk 46
                       + W t E++ll++av+++G+++W++Ia +++        +t+ +c+++++ 
  orange1.1g005668m 14 QQWGTLEELLLACAVNRHGTRSWDSIAMEVQnrssalSSLTPQSCRDKFNE 64
                       67*********************************99999*******9986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.62866IPR017877Myb-like domain
SMARTSM007173.5E-61268IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.9E-61267IPR009057Homeodomain-like
SuperFamilySSF466893.41E-61395IPR009057Homeodomain-like
PfamPF002491.1E-101464IPR001005SANT/Myb domain
CDDcd001674.43E-61665No hitNo description
SMARTSM002971.6E-16126413IPR001487Bromodomain
Gene3DG3DSA:1.20.920.102.1E-15291416IPR001487Bromodomain
SuperFamilySSF473709.68E-18314417IPR001487Bromodomain
CDDcd043695.06E-16315408No hitNo description
PfamPF004393.1E-11322399IPR001487Bromodomain
PROSITE profilePS5001412.485323394IPR001487Bromodomain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 685 aa     Download sequence    Send to blast
MARERHGTTS QQQQQWGTLE ELLLACAVNR HGTRSWDSIA MEVQNRSSAL SSLTPQSCRD  60
KFNEIRRRFT VKNGAESTSL VPLVDQLRQI RVQELRAEVQ RRDVSIVSLE LKVKRLEEER  120
EKSMKPEADL ESDRKAMPEI EAAVDGDGDS NRSFNESNST TQKAETTNKK QNDDAEGEEE  180
KEQKMKPEPD VENDPVQNRT ESGPDREDRD WSSNGKLNEN GNGTGNVKEE TDEDNDKTAS  240
EGKVESVKNK TSAVGGLSES NELWDESKRE GKQSSDVQSS ASLSRNKRRR SGEEPYDEEV  300
SPATKKVLAV KSEPLVRFLG MIRSHRLSSH FERRLRSQES ERYKKLVRQH IDLRTIQSRL  360
DRGLYSNCFQ KFFRDLLLLF NNFVIFFRKS SQEYAAAQEL RTLVIKEMTD MLRKQQPIAV  420
TKPKPKPKPE HHRQQPQPPP ASLSKPNRGS TMVVCGKRSS IKAISKNAYG KKGDRKDREV  480
EEKPKVNEKK VDSSFVGIED KGIKKKRSQE RSVSLRRNSR SSSRSGDVKH QFGGNELSSH  540
DTLEAKTENK KENAVKKKKL GAASFLKRMK QNSPSEVMED DDEEEDENDN DNDDDDSGDD  600
SKDSKVEEEK KRRSVTRRDV NRVTRSSRGR GVREENRRRG VGRPPKRSAS GAMSPPEKTS  660
GKRGRDNGES EVGGGGRSRK RTRR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006492654.10.0glutamic acid-rich protein
TrEMBLA0A067EMY10.0A0A067EMY1_CITSI; Uncharacterized protein
TrEMBLA0A2H5PC540.0A0A2H5PC54_CITUN; Uncharacterized protein
STRINGXP_006492654.10.0(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1708978
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57980.13e-38DNA-binding bromodomain-containing protein