PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g004988m
Common NameCISIN_1g004963mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family WRKY
Protein Properties Length: 721aa    MW: 77670.6 Da    PI: 5.9275
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g004988mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY102.13.1e-32301358260
                        --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
               WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                        +DgynWrKYGqK+vkgse+prsYY+Ct+++C+vkkkvers  +++++ei+Y+g Hnh+k
  orange1.1g004988m 301 EDGYNWRKYGQKQVKGSEYPRSYYKCTHPNCQVKKKVERSL-EGHITEIIYKGAHNHPK 358
                        7****************************************.***************85 PP

2WRKY103.79.9e-33513571159
                        ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                        ldDgy+WrKYGqK+vkg+++prsYY+CtsagC+v+k+ver+++d k v++tYeg+Hnh+
  orange1.1g004988m 513 LDDGYRWRKYGQKVVKGNPNPRSYYKCTSAGCTVRKHVERASHDLKSVITTYEGKHNHD 571
                        59********************************************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081122.848295359IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.8E-28299359IPR003657WRKY domain
SMARTSM007746.8E-36300358IPR003657WRKY domain
SuperFamilySSF1182902.62E-25300359IPR003657WRKY domain
PfamPF031061.6E-24301357IPR003657WRKY domain
Gene3DG3DSA:2.20.25.805.3E-37498573IPR003657WRKY domain
SuperFamilySSF1182901.57E-28505573IPR003657WRKY domain
PROSITE profilePS5081138.664508573IPR003657WRKY domain
SMARTSM007741.5E-37513572IPR003657WRKY domain
PfamPF031066.5E-25514571IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0009942Biological Processlongitudinal axis specification
GO:0030010Biological Processestablishment of cell polarity
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 721 aa     Download sequence    Send to blast
MVMAGIDDNM AVIGDWVPPS PSPRTFFAAI SGDDISSREP PSENGADGLS LGSQEQMTSG  60
NTEKKNMMTG GASTDLGPFS EQKSRLAARA GFNAPRLNTE SIRTSDLSLN PDIRSPYLTI  120
PPGLSPTTLL ESPVFLSNSL AQPSPTTGKF SFIPNGNGKS STCISEAPDK SKDNILEDIN  180
TSFAFKPVAE SGSFSLGTRN KSFPSIEVSV QSENSPQNVN AAKVHSQYRN SLSLQVQTDF  240
SRATTEKDNG CNTILADQRV FDTFGGSTEH SPPLDEQQDE EGDQRGSGDS MVAGAGGASS  300
EDGYNWRKYG QKQVKGSEYP RSYYKCTHPN CQVKKKVERS LEGHITEIIY KGAHNHPKPP  360
PNRRSAIGSN PLDMQLDIHE QAGLQSGADG DPSWANTQKG TAGGTPEWRH DTVEVTSAAP  420
VGPEYCNQSS ALPAQNGTPY ESGDAVDASS TFSNDEDEDD QVTHCSVGFD GEEDESESKR  480
RKIEAYATEM SGATRAIREP RVVVQTTSEV DILDDGYRWR KYGQKVVKGN PNPRSYYKCT  540
SAGCTVRKHV ERASHDLKSV ITTYEGKHNH DVPAARNSSH VNSGSSSAVA AHAAAAGQIH  600
RPEPSQLHNS MARFDRPASF GSFRVPGRQQ FGPSPGFSFG MHQPGLANLS MAGLGPGQPE  660
LPVLPVHPYL AQQRQVNEMG FMMPKGEPKV EPMSEPGLNL SNRSAVYQQL MSRLPLGPQM  720
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-36301574878Probable WRKY transcription factor 4
2lex_A1e-36301574878Probable WRKY transcription factor 4
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Low expression in senescent leaves (PubMed:11722756). Expressed in both the unfertilized egg cell and the pollen tube (PubMed:21316593). {ECO:0000269|PubMed:11722756, ECO:0000269|PubMed:21316593}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Regulates WOX8 and WOX9 expression and basal cell division patterns during early embryogenesis. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Required to repolarize the zygote from a transient symmetric state. {ECO:0000269|PubMed:21316593}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00071PBMTransfer from AT5G56270Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024033320.10.0probable WRKY transcription factor 2 isoform X2
SwissprotQ9FG770.0WRKY2_ARATH; Probable WRKY transcription factor 2
TrEMBLA0A067G5R80.0A0A067G5R8_CITSI; Uncharacterized protein
STRINGXP_006474751.10.0(Citrus sinensis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56270.10.0WRKY DNA-binding protein 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Ueda M, et al.
    Transcriptional integration of paternal and maternal factors in the Arabidopsis zygote.
    Genes Dev., 2017. 31(6): p. 617-627
    [PMID:28404632]
  4. Lei R, et al.
    Arabidopsis WRKY2 and WRKY34 transcription factors interact with VQ20 protein to modulate pollen development and function.
    Plant J., 2017. 91(6): p. 962-976
    [PMID:28635025]