PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g001272m
Common NameCISIN_1g001099mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family MYB_related
Protein Properties Length: 1111aa    MW: 124000 Da    PI: 8.7196
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g001272mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding35.52.4e-114681340
                       SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS
    Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40
                        W++eE e++++a +++G++ Wk+Ia+ +  +Rt++++
  orange1.1g001272m 46 QWSKEELERFYEAYRKYGKD-WKKIAAAVR-NRTAEMV 81
                       6*****************99.*********.***9976 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129310.1094295IPR017884SANT domain
SuperFamilySSF466897.18E-114389IPR009057Homeodomain-like
SMARTSM007172.3E-64391IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.3E-74681IPR009057Homeodomain-like
PfamPF002499.2E-104681IPR001005SANT/Myb domain
CDDcd001675.15E-84781No hitNo description
SMARTSM011351.2E-51629730IPR033471DIRP domain
PfamPF065844.8E-32629729IPR033471DIRP domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0016592Cellular Componentmediator complex
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1111 aa     Download sequence    Send to blast
MAPTRRSKSV NKRVAYTSEV ASKKKAENAD RSGKRKRKLS DMLGPQWSKE ELERFYEAYR  60
KYGKDWKKIA AAVRNRTAEM VEALFTMNRA YLSLPEGTAS VVGLIAMMTD HYGILAGSDG  120
EQESDEATGS SQKSQKCAGG KFQNPPPKGS DGPSPDLLNF QSAAPNYGCL SLLKKRRSGS  180
RPRAVAKRTP RVPVSYSYDK DNTEKYISPI KQGLKPRLGS IDDDVAHEIA LALTEASQRG  240
GSLLVSQTPK RKRGKPSPVQ KGSRTCDVSE MNSSKPHGSE MDEDGRELSL GSTDADNGYY  300
SRDKIYLMDA ETADTVEIQQ KGKRYHSKKL KQEESVSNHL DDIKEACSGT EEGQDMVVMK  360
GKFAMEIADE KNSRSYSKGS KKRSKKVLFK RDESSEFDAL QTLADLSLMM PETTADTELS  420
LQLKEEKPEA VNESKLKGNR SSTGVKDTAI KTSKLGKDCT DDVSVIPESE EGNHLTNSGN  480
RTKRQKFLPI KLRMDATEEL KKFISKGKRS LSASQSKHGK LVKPPEHTSS TDHEKEGNNS  540
ASSTAHVRTA NQVNLPTKVR SRRKMNMQKL LIERDKMSSE DILKSSEDIF NDQNRTNSSF  600
FDRAIKQKEQ LSNCLSWYQV RVWCVSEWFY STIDYPWFAK REFVEYLDHV GLSHVPRLTR  660
VEWGVIRSSL GRPRRFSEQF LKEEKEKLNQ YRESVRNHYS ELRSGTKEGL PTDLARPLYV  720
GQRIIAVHPR TREICDGSVL TVEHSRYRVQ FDKRELGIEF VQDIDCMPLN PLENMPASLT  780
RPNVAFGKFM DNFTELQMNG QPRERDIEGY MKFTPCENLE TAYAPSHISP STNYPINNLL  840
QQHKGVSYTD SEVHVGSTGQ AKEEDVLALS HLRHALDKKV ASALFCLRQR NTYQGNTCLT  900
GLKPMSGLGN LGGGLPNSFD HSAYQTPESG PHVVEVVESS RSKAQKMVDV AVQALSSLEK  960
EGNGIERIEE AMDYVNNKLA GNDSGMPSIR SSTSADLVHS SRNSQDQQLE THTTNLLANS  1020
RAPDSTLNNS SDENSAHIPL ELIAHCVAAL FMIQRCTERD FPPADVALVL DSAVTSLQPC  1080
CSQNLPVYAE IQKCMGIIRN QILALIPTST *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12237KKKAENADRSGKRKRK
2248255PKRKRGKP
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.56541e-135callus| flower
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed ubiquitously in vegetative and reproductive tissues. {ECO:0000269|PubMed:15246533}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024958482.10.0protein ALWAYS EARLY 3 isoform X3
SwissprotQ6A3320.0ALY3_ARATH; Protein ALWAYS EARLY 3
TrEMBLA0A067G9630.0A0A067G963_CITSI; Uncharacterized protein
STRINGXP_006489119.10.0(Citrus sinensis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21430.20.0DNA binding
Publications ? help Back to Top
  1. Pfaff C, et al.
    ALY RNA-Binding Proteins Are Required for Nucleocytosolic mRNA Transport and Modulate Plant Growth and Development.
    Plant Physiol., 2018. 177(1): p. 226-240
    [PMID:29540591]