PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.388540.1
Common NameCsa_7G375830, LOC101205293
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family ERF
Protein Properties Length: 148aa    MW: 16104.3 Da    PI: 4.8502
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.388540.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP266.55.1e-211769156
             AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                    s+y+G+r+++ +g+++AeIrdps ng  +r +lg+f+taeeAa+a+++a+ +++g+
  Cucsa.388540.1 17 SRYRGIRRRP-WGKFAAEIRDPSRNG--ARLWLGTFDTAEEAARAYDQAAYAFRGH 69
                    79********.**********98887..*************************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008477.1E-151769IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-241777IPR016177DNA-binding domain
CDDcd000182.16E-271777No hitNo description
Gene3DG3DSA:3.30.730.108.0E-321878IPR001471AP2/ERF domain
PROSITE profilePS5103225.0271876IPR001471AP2/ERF domain
SMARTSM003803.0E-361882IPR001471AP2/ERF domain
PRINTSPR003671.2E-111930IPR001471AP2/ERF domain
PRINTSPR003671.2E-114258IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 148 aa     Download sequence    Send to blast
MEGKRTGNEG KRSTNESRYR GIRRRPWGKF AAEIRDPSRN GARLWLGTFD TAEEAARAYD  60
QAAYAFRGHL AILNFPNEYQ SGNPNFGAGY GSSAASGSSS TTTISFGGNY SGNNASRGSG  120
EVIEFEYLDN ELLEELLQSE GEGREEN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-321813214114Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818030.0LN681803.1 Cucumis melo genomic scaffold, anchoredscaffold00026.
GenBankLN7132550.0LN713255.1 Cucumis melo genomic chromosome, chr_1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008451255.19e-98PREDICTED: ethylene-responsive transcription factor ERF098-like
RefseqXP_011659259.11e-98PREDICTED: ethylene-responsive transcription factor ERF098-like
SwissprotQ9LTC51e-43ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLA0A0A0KAA63e-97A0A0A0KAA6_CUCSA; Uncharacterized protein
TrEMBLA0A1S3BR432e-96A0A1S3BR43_CUCME; ethylene-responsive transcription factor ERF098-like
STRINGXP_008451255.14e-97(Cucumis melo)
STRINGXP_004148977.15e-98(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27033215
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23230.11e-27ERF family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]
  4. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]