PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.385930.1
Common NameCsa_6G147520, LOC101212002
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family TCP
Protein Properties Length: 135aa    MW: 14744.8 Da    PI: 10.4767
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.385930.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP103.53.5e-3233114881
             TCP   8 hskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa........seceaesssss 81 
                      +++h+kv gRdRR+Rl+ +caar+F+L++eLG ++d++t+eWLl++a+p+i++ltg +  sa        + c+++ss+ +
  Cucsa.385930.1  33 PKDRHAKVHGRDRRIRLPPLCAARVFQLTRELGNKTDGQTVEWLLKKAEPSIIALTGKNIASAtldlpgcsKPCDPSSSNTN 114
                     59********************************************************666665555444333322222222 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.0E-2733113IPR005333Transcription factor, TCP
PROSITE profilePS5136925.433387IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 135 aa     Download sequence    Send to blast
MRVKRPTSNS PRNAPKPNSP IASESKLIPS KAPKDRHAKV HGRDRRIRLP PLCAARVFQL  60
TRELGNKTDG QTVEWLLKKA EPSIIALTGK NIASATLDLP GCSKPCDPSS SNTNSTTTSY  120
FEEETLGGNN YAFPM
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819350.0LN681935.1 Cucumis melo genomic scaffold, unanchored_scaffold00115.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004145813.17e-96PREDICTED: transcription factor TCP7-like
SwissprotQ9FMX22e-27TCP7_ARATH; Transcription factor TCP7
TrEMBLA0A0A0KDC71e-94A0A0A0KDC7_CUCSA; Uncharacterized protein
STRINGXP_004165860.13e-95(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF38193363
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23280.11e-28TCP family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]