PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.384890.1
Common NameCsa_6G156050
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family TCP
Protein Properties Length: 258aa    MW: 28131.3 Da    PI: 9.671
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.384890.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP110.52.4e-3444116273
             TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt......ssssasec 73 
                     +++kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LGfd++sk+++WL+++ak ai++l  +      +     +c
  Cucsa.384890.1  44 TARKDRHSKVYTSRGLRDRRVRLSAHTAIQFYDVQDRLGFDRPSKAVDWLIKKAKSAIDKLSADlppcntN-----AC 116
                     789**********************************************************9995553220.....23 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.2E-3144114IPR005333Transcription factor, TCP
PROSITE profilePS5136933.11846104IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MDSNKPFLNS TLEQHSTPTT TMGINTIPGQ NIHIPGGGLV VRSTARKDRH SKVYTSRGLR  60
DRRVRLSAHT AIQFYDVQDR LGFDRPSKAV DWLIKKAKSA IDKLSADLPP CNTNACFSVP  120
VETQTNGIDV VTVFYTASSG NSGPGFDDGF EKIVAWNTNV FGSIPILNQS STAFPQRGPL  180
QSRLESTVPH YTWNDLSVVA AGKRHPNPIQ ENSSPSIPRF ISNELPHLDV HGQFQNDGDG  240
KDNGGKSSSH SSSYSRR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A3e-2251104154Putative transcription factor PCF6
5zkt_B3e-2251104154Putative transcription factor PCF6
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819211e-177LN681921.1 Cucumis melo genomic scaffold, anchoredscaffold00039.
GenBankLN7132651e-177LN713265.1 Cucumis melo genomic chromosome, chr_11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004149285.11e-122PREDICTED: uncharacterized protein LOC101204399
TrEMBLA0A0A0KF061e-161A0A0A0KF06_CUCSA; Uncharacterized protein
STRINGXP_008456416.11e-140(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF116334105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15030.31e-36TCP family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]