PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.372760.1
Common NameCsa_4G370550, LOC101215527
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family ERF
Protein Properties Length: 233aa    MW: 25881.8 Da    PI: 4.9522
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.372760.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.41.7e-182373155
             AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    ++ykGVr ++ +g+Wv+eIr p   ++++r++lg++ t+e Aa+a++aa ++l+g
  Cucsa.372760.1 23 KKYKGVRMRS-WGSWVSEIRAP---NQKTRIWLGSYSTPEAAARAYDAALLCLKG 73
                    59*****998.**********9...336*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.68E-192481IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.9E-302482IPR001471AP2/ERF domain
PROSITE profilePS5103221.7732481IPR001471AP2/ERF domain
PfamPF008471.4E-112473IPR001471AP2/ERF domain
SMARTSM003802.4E-342487IPR001471AP2/ERF domain
PRINTSPR003671.6E-82536IPR001471AP2/ERF domain
CDDcd000188.30E-192782No hitNo description
PRINTSPR003671.6E-84763IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MVKKVEKTAV ESSLAPPPPP FKKKYKGVRM RSWGSWVSEI RAPNQKTRIW LGSYSTPEAA  60
ARAYDAALLC LKGASASLNF PEIANSIQIF DNNSHFRRHH HHIHTSDDAI MSPKSIQRFA  120
AAAANGFPDN VGTVVTPPSS AVSSPSTSTS STPSDQPEDE MSVIVTSDGF YNEFDQPTAE  180
MESWCNYFDA LQSPKYIDQI FTDGWLDFDS MAEGKMDHFE EEESDIRLWS FC*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818670.0LN681867.1 Cucumis melo genomic scaffold, anchoredscaffold00013.
GenBankLN7132610.0LN713261.1 Cucumis melo genomic chromosome, chr_7.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004142694.11e-174PREDICTED: ethylene-responsive transcription factor ERF014-like
TrEMBLA0A0A0L1W91e-173A0A0A0L1W9_CUCSA; Uncharacterized protein
STRINGXP_004172337.11e-173(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47983156
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21910.11e-32ERF family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]