PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.362830.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family LBD
Protein Properties Length: 125aa    MW: 13313.4 Da    PI: 8.7065
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.362830.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260117.11.1e-3629118189
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 
                     +C aCk+lrrkC+k+C++apyf ++q +++fa+vhk+FGasn +kll+++p+ +r da  +l+yeA ar+rdPvyG+v+ i++lqqq+++
  Cucsa.362830.1  29 PCGACKFLRRKCVKGCIFAPYFDSDQgAAHFAAVHKVFGASNASKLLHRIPPPKRLDACVTLCYEALARVRDPVYGCVSQIFSLQQQVSS 118
                     7***********************9989***********************************************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089121.26128124IPR004883Lateral organ boundaries, LOB
PfamPF031956.5E-3629118IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 125 aa     Download sequence    Send to blast
MTHTQTSIAL HQHTLMSTGE GGVAHGGGPC GACKFLRRKC VKGCIFAPYF DSDQGAAHFA  60
AVHKVFGASN ASKLLHRIPP PKRLDACVTL CYEALARVRD PVYGCVSQIF SLQQQVSSLI  120
IVDT*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN7132651e-166LN713265.1 Cucumis melo genomic chromosome, chr_11.
GenBankLN6819251e-166LN681925.1 Cucumis melo genomic scaffold, anchoredscaffold00052.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004145059.23e-82PREDICTED: LOB domain-containing protein 19
SwissprotO813223e-48LBD31_ARATH; LOB domain-containing protein 31
TrEMBLA0A0A0KCW11e-70A0A0A0KCW1_CUCSA; Uncharacterized protein
STRINGPOPTR_0014s06580.13e-54(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17713493
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00220.12e-48LBD family protein