PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.350850.1
Common NameCsa_1G267770, LOC101213687
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family ARR-B
Protein Properties Length: 698aa    MW: 76294.6 Da    PI: 6.6598
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.350850.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like764.8e-24208264155
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtP..ktilelmkvkgLtlehvkSHLQkYRl 55 
                     kpr++W+ eLH++Fv+av+qLG + k  P  k+il+lm+v+gLt+e+v+SHLQkYRl
  Cucsa.350850.1 208 KPRVVWSVELHRKFVSAVNQLGLESKLRPcrKKILDLMNVEGLTRENVASHLQKYRL 264
                     79*******************99999888779************************8 PP

2Response_reg83.56.7e-28231311109
                     EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS
    Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 
                     vl vdD+p+ +++l+++l+k +y +v++++++ eal++l+e++  +Dl++ D++mp+mdG++ll+     e++lp+i+++ah++ e++ + +  G
  Cucsa.350850.1  23 VLAVDDDPICLKVLESLLRKCQY-HVTTTKQSIEALRMLRENRnkFDLVISDVNMPDMDGFKLLELVGL-EMDLPVIMLSAHSDTELVMKGIAHG 115
                     799********************.***************999889*******************87754.558********************** PP

                     ESEEEESS--HHHHHH CS
    Response_reg  94 akdflsKpfdpeelvk 109
                     a d+l Kp+ +eel +
  Cucsa.350850.1 116 ACDYLLKPVRIEELKN 131
                     *************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363921.8E-1632697IPR017053Response regulator B-type, plant
SuperFamilySSF521726.83E-3820145IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23006.0E-4420156No hitNo description
SMARTSM004481.8E-3421133IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011045.27922137IPR001789Signal transduction response regulator, receiver domain
PfamPF000722.4E-2523131IPR001789Signal transduction response regulator, receiver domain
CDDcd001567.31E-3024137No hitNo description
Gene3DG3DSA:1.10.10.606.8E-27205269IPR009057Homeodomain-like
SuperFamilySSF466896.99E-16206268IPR009057Homeodomain-like
TIGRFAMsTIGR015575.7E-20208264IPR006447Myb domain, plants
PfamPF002499.7E-6210263IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 698 aa     Download sequence    Send to blast
MVEKRRKVGD DGATDHFPVG MRVLAVDDDP ICLKVLESLL RKCQYHVTTT KQSIEALRML  60
RENRNKFDLV ISDVNMPDMD GFKLLELVGL EMDLPVIMLS AHSDTELVMK GIAHGACDYL  120
LKPVRIEELK NIWQHVIRRK KLEPKAKNKF PSQNKVQNGG NEVEQGFSPT SNADSAKFNR  180
KRKDQDDDDD DEGKENGLDS DDPSNQKKPR VVWSVELHRK FVSAVNQLGL ESKLRPCRKK  240
ILDLMNVEGL TRENVASHLQ KYRLYLKRIS NVASQQANMV ATFGSKDGTY MRMGSLDGYG  300
DLHGFAGSGR LPNSSLSSYS PVGMLGRLNS PAGMSLRGIT SSGLIQQNSQ NLNCAINNLG  360
KLQPTTMLSP NQTTNLLQGI PTSLEIGQLQ HSKSTTSIGD FNTMNDTSGF GVPNSFPETR  420
ANIGNSTYSV SPAPLMLQGT IPTYGNQTSL RVDPLNGETF DIDVGGSNFL DPDPSNGNWQ  480
GAAHLSRFSA TSLTTNEAYP SDQLHSMNSV ISSTPSTIGN ISVDFSSRSA GSASLLDSRD  540
VQCQTGVVGS VIQSMNTMPK QSWEEHKHDF GRNVQHNLGA INSLVASDGN PTPLNQSFNQ  600
NGVVRDRKVG SSLIVPSNVA SLSFPQHGVV EKLGPNTKTN VDGNYLLNQM KSHDGSIQGS  660
FESLDDIMNS IIKREQNEIP EMNGEFGFDH FSLGSCT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A4e-21206270364ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818080.0LN681808.1 Cucumis melo genomic scaffold, anchoredscaffold00012.
GenBankLN7132560.0LN713256.1 Cucumis melo genomic chromosome, chr_2.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004146697.10.0PREDICTED: two-component response regulator ARR12 isoform X1
SwissprotQ6K8X61e-132ORR23_ORYSJ; Two-component response regulator ORR23
TrEMBLA0A0A0LWL40.0A0A0A0LWL4_CUCSA; Uncharacterized protein
STRINGXP_004146697.10.0(Cucumis sativus)
STRINGXP_004162449.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF95634112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.11e-124response regulator 12
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  3. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  4. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]