PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.320970.1
Common NameCsa_3G019980, LOC101210780
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family C2H2
Protein Properties Length: 253aa    MW: 28211.8 Da    PI: 8.6564
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.320970.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2120.00065628123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    +kC  C++sF++   L  H++ H
  Cucsa.320970.1  6 HKCRLCSRSFTNGRALGGHMKAH 28
                    79******************998 PP

2zf-C2H215.26.3e-05144166123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C++C k+F+++  L  H +++
  Cucsa.320970.1 144 FRCGKCRKTFRSNRALFGHRKVC 166
                     89*****************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.12E-5230No hitNo description
PfamPF139121.1E-6529IPR007087Zinc finger, C2H2
SMARTSM003550.048628IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.806628IPR007087Zinc finger, C2H2
PROSITE patternPS000280828IPR007087Zinc finger, C2H2
SuperFamilySSF576678.4E-8142213No hitNo description
SMARTSM0035533144164IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.806144173IPR007087Zinc finger, C2H2
PfamPF139120.028144164IPR007087Zinc finger, C2H2
SMARTSM003550.056191213IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.702191213IPR007087Zinc finger, C2H2
PfamPF139129.0E-11191213IPR007087Zinc finger, C2H2
PROSITE patternPS000280193213IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MEEERHKCRL CSRSFTNGRA LGGHMKAHLA TFSIEHQKTF KSPDLEMLSA NGSISIVQDR  60
ESETESKNPT RRRSKRTRRL NTESLPSPSP EPASSISDTS PEEDVAICLV MLSMEKPSSW  120
KDQSRTPESE KSTAAMVGRV RKSFRCGKCR KTFRSNRALF GHRKVCRKEG EEEDGEEEEK  180
GMINGGNWKI FKCPYCCKVF GSGQALGGHK RSHIQGSIRT AIDRSSSKLE IGLDLNLPAP  240
LEEDDYSVVS DV*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818600.0LN681860.1 Cucumis melo genomic scaffold, anchoredscaffold00021.
GenBankLN7132600.0LN713260.1 Cucumis melo genomic chromosome, chr_6.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004147254.10.0PREDICTED: zinc finger protein ZAT4-like
TrEMBLA0A0A0L2750.0A0A0A0L275_CUCSA; Uncharacterized protein
STRINGXP_004162353.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF76734122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.13e-30C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]