PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.306530.1
Common NameCsa_3G743410, LOC101217263
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family C2H2
Protein Properties Length: 259aa    MW: 28536.8 Da    PI: 7.8035
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.306530.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2120.0006689111123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     y+C+ C+++F++   L  H  +H
  Cucsa.306530.1  89 YQCKTCDRCFPSFQALGGHRASH 111
                     9***********99999998887 PP

2zf-C2H2140.00015179201123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C++Cg  Fs+   L  H+r+H
  Cucsa.306530.1 179 HECSICGAEFSSGQALGGHMRRH 201
                     78********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.22E-588117No hitNo description
PfamPF139123.3E-1089113IPR007087Zinc finger, C2H2
PROSITE profilePS501579.84789116IPR007087Zinc finger, C2H2
SMARTSM003550.07789111IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028091111IPR007087Zinc finger, C2H2
SuperFamilySSF576676.83E-6175202No hitNo description
Gene3DG3DSA:3.30.160.609.2E-4177201IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139123.2E-13178203IPR007087Zinc finger, C2H2
SMARTSM003550.01179201IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.868179206IPR007087Zinc finger, C2H2
PROSITE patternPS000280181201IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MAETPDENQA QIIKGKRTKR LRPSSVSSTS SSADCSSSSA GLTEEEEEDQ DLANCLILLA  60
QGRSRITEGC SSVFVQQKLV AANESLFLYQ CKTCDRCFPS FQALGGHRAS HKKPKFFNNI  120
TANSVEQQHQ QQQQQHHHHH HQDNNFTTSN SIQLSLQLST ASRPPPPPTA GDLIKSKVHE  180
CSICGAEFSS GQALGGHMRR HRALTATTTR PITTTPQFIK KERNMLELDL NLPAPEDDRH  240
RPPVAVFSTA SPLVDCHY*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818410.0LN681841.1 Cucumis melo genomic scaffold, anchoredscaffold00011.
GenBankLN7132580.0LN713258.1 Cucumis melo genomic chromosome, chr_4.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011652845.11e-154PREDICTED: zinc finger protein ZAT5-like
TrEMBLA0A0A0LDR81e-152A0A0A0LDR8_CUCSA; Uncharacterized protein
STRINGXP_004161279.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58634141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28200.12e-39C2H2 family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]